New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 706880	46 (0.880)	3 (0.070)	3/214	NT	7.2%	intergenic (+53/+193)	PP_0599/rpsT	paraquat‑inducible protein B/30S ribosomal protein S20
	?	NC_002947	= 706965	37 (0.810)					intergenic (+138/+108)	PP_0599/rpsT	paraquat‑inducible protein B/30S ribosomal protein S20

TCGCCAAGTGATGTAAAAGTAGGGCCGCCAAGCGCGGCCCTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCC  >  NC_002947/706817‑707111                                                                                                                                                     |                                                                                                                                                   ttgcctgcgatttatgcttgcgggcccagttccatgcgggactcgatcTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGacac                                                                                                                                                   <  2:1099011‑M1/102‑1 (MQ=255)   gcctgcgatttatgcttgcgggcccagttccatgcgggactcgatcTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACaa                                                                                                                                                 >  1:1352726‑M1/47‑150 (MQ=255)    ccAAGTGATGTAAAAGTAGGGCCGCCAAGCGCGGCCCTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACAcaag                                                                                                                                                <  1:86916‑M2/150‑5 (MQ=255)       aGTGATGTAAAAGTAGGGCCGCCAAGCGCGGCCCTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACAcaaggcc                                                                                                                                             >  1:672824‑M2/1‑143 (MQ=255)            agcaaaagtaGGGCCGCCAAGCGCGGCCCTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACAcaaggccgctcc                                                                                                                                        >  1:1309223‑M2/4‑138 (MQ=255)                 aaGTAGGGCCGCCAAGCGCGGCCCTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAg                                                                                                                                   >  2:693856/1‑150 (MQ=255)                   gTAGGGCCGCCAAGCGCGGCCCTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGACTCAGCGCAGAAAATGAGATTGCCGGGGCTGCCCCGCAGGCCTATGGCGACAAAAGGCCGCTCCCACAGac                                                                                                                                 >  1:485107/1‑149 (MQ=37)                    gcgggcccagttccatgcgggactcgatcTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATc                                                                                                                                >  1:1099011‑M1/30‑150 (MQ=255)                      gggCCGCCAAGCGCGGCCCTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGa                                                                                                                              >  2:1226845/1‑150 (MQ=255)                               aGCGCGGCCCTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGTCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCAt                                                                                                                     <  1:208953/150‑1 (MQ=255)                                gcgcGGCCCTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATg                                                                                                                    <  2:1032301/150‑1 (MQ=255)                                 cgcgGCCCTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATgg                                                                                                                   <  2:86916/150‑1 (MQ=255)                                  gcgGCCCTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGa                                                                                                                  >  2:448974/1‑150 (MQ=255)                                       ccTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCa                                                                                                                      >  2:428322/1‑141 (MQ=255)                                       ccTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCa                                                                                                                      <  1:428322/141‑1 (MQ=255)                                        cTGCTTTTTTGTGGGTGCTGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCTGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTggg                                                                                                            >  2:40934/1‑150 (MQ=255)                                         tGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATg                                                                                                                    >  1:376276/1‑141 (MQ=255)                                         tGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATg                                                                                                                    <  2:376276/141‑1 (MQ=255)                                         tGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGc                                                                                                           >  1:593069/1‑150 (MQ=255)                                               tttGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCaa                                                                                                     <  1:544921/150‑1 (MQ=255)                                                ttGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCTGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAg                                                                                                    <  1:40934/150‑1 (MQ=255)                                                     ggAGCGGCCTTGCGTCACGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACAcaaggccgctcccacaaaaaagcagggccgcgcttggcggccctacttttaca                                                                                               <  1:1373739‑M2/150‑54 (MQ=255)                                                              ttGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACAcaaggccgctcccacaaaaaagcagggccgcgcttggcggccctacttttacatcacttggc                                                                                      <  2:414485‑M2/150‑63 (MQ=255)                                                                GCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCaa                                                                                    >  1:719371‑M1/1‑150 (MQ=255)                                                                  gTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGcaaca                                                                                  >  2:395260/1‑150 (MQ=255)                                                                         aaGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAAcc                                                                           <  1:693856/150‑1 (MQ=255)                                                                              gcgcGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGAccc                                                                      >  1:1331528/1‑150 (MQ=255)                                                                                  gTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAgg                                                                  >  2:1092024/1‑150 (MQ=255)                                                                                  gTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAgg                                                                  <  1:1226845/150‑1 (MQ=255)                                                                                        gCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACt                                                                                                               <  2:65945/99‑1 (MQ=255)                                                                                        gCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACt                                                                                                               >  1:65945/1‑99 (MQ=255)                                                                                        gCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGt                                                            >  2:717495/1‑150 (MQ=255)                                                                                            cTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGcaaca                                                                                  >  1:422264/1‑124 (MQ=255)                                                                                            cTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGcaaca                                                                                  <  2:422264/124‑1 (MQ=255)                                                                                             tCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGAAGCTGTATCGTGACACAAGGCCGCTCCCGCAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTc                                                       >  1:248271/1‑150 (MQ=255)                                                                                                  ctcAGCGCAGAAAGGGAGATTGCCTTGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTACCCCAGGTCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTa                                                  <  1:448974/150‑1 (MQ=255)                                                                                                  ctcAGCGCACAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCCACACAAGGCTGCGCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGGATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGttttttgttgc                                                  <  2:485107/150‑7 (MQ=255)                                                                                                     aGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAgcg                                               <  1:1092024/150‑1 (MQ=255)                                                                                                     aGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAgcg                                               >  2:77881/1‑150 (MQ=255)                                                                                                        gcAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACAcaaggccgctcccacaaaaaagcagggccgcgcttggcggccctacttttacatcacttggcgatctgaatcttcggtgcccactgcagccattcatcctcggc                                            >  1:414485‑M2/1‑46 (MQ=255)                                                                                                           gAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGc                                         <  2:1331528/150‑1 (MQ=255)                                                                                                              aGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGtt                                           >  1:1392804/1‑144 (MQ=255)                                                                                                              aGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGtt                                           <  2:1392804/145‑2 (MQ=255)                                                                                                                tGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAgg                                    >  1:1419744/1‑150 (MQ=255)                                                                                                                       gCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGgcagctgc                             >  2:181908/1‑150 (MQ=255)                                                                                                                               tGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGcttctt                     <  2:248271/150‑1 (MQ=255)                                                                                                                                  cccGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCa                  <  2:678564/150‑1 (MQ=255)                                                                                                                                             aTCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGAtg       >  1:696583/1‑150 (MQ=255)                                                                                                                                               cgcgACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGAtgtg     <  1:627602/150‑1 (MQ=255)                                                                                                                                                  gACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGcc  <  2:1235071/150‑1 (MQ=255)                                                                                                                                                  gACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGcc  <  1:395260/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TCGCCAAGTGATGTAAAAGTAGGGCCGCCAAGCGCGGCCCTGCTTTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTCGACTAGCGCGTCGCTTAGGCAGCTGCAGCTTCTTTCAGCGCCTTGATGTGGCC  >  NC_002947/706817‑707111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.