New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1029045 =	56 (1.070)	4 (0.080)	3/232	NT	7.5%	intergenic (‑303/+78)	dppA‑III/PP_0886	dipeptide ABC transporter substrate‑binding protein/hypothetical protein
	?	NC_002947	1029098 =	46 (0.930)					intergenic (‑356/+25)	dppA‑III/PP_0886	dipeptide ABC transporter substrate‑binding protein/hypothetical protein

TAGGGGAAAGCGTAGGATGCATCCTAATGGTGCGTAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGGCGCCGGTGCTGCTTCATCAGCCCCCATGGCCTTCATCGCCATCGGCGC  >  NC_002947/1028956‑1029242                                                                                                                                               |                                                                                                                                                 taggGGAAAGCGTAGGATGCATCCTAATGGTGCGTAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCcaca                                                                                                                                           >  1:1311363/1‑150 (MQ=255)   ggggAAAGCGTAGGATGCATCCTAATGGTGCGTAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGTTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAga                                                                                                                                         >  1:799632/1‑150 (MQ=255)    gggAAAGCGTAGGATGCATCCTAATGGTGCGTAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAgat                                                                                                                                        >  2:142268/1‑150 (MQ=255)       aaaGCGTAGGATGCATCCTAATGGTGCGTAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAgatgat                                                                                                                                     <  2:799632/150‑1 (MQ=255)       aaaGCGTAGGATGCATCCTAATGGTGCGTAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAgatgat                                                                                                                                     >  1:707464/1‑150 (MQ=255)         aGCGTAGGATGCATCCTAATGGTGCGTAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGc                                                                                                                                   <  1:142268/150‑1 (MQ=255)           cGTAGGATGCATCCTAATGGTGCGTAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCTGGCTCCCACAGATGATGCGt                                                                                                                                 <  1:560351/150‑1 (MQ=255)           accagtgaagtgagcatgaatgccgatggcctgatcgaagtgcagatgccataaggcgtccacgcatcatctgtgggagCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGt                                                                                                                                 >  2:1296900‑M1/80‑150 (MQ=255)                     aTCCTAATGGTGCGTAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTa                                                                                                                       <  2:1032532/150‑1 (MQ=255)                      tCCTAATGGTGCGTAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTAt                                                                                                                      <  2:1311363/150‑1 (MQ=255)                      tCCTAATGGTGCGTAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTAt                                                                                                                      <  2:707464/150‑1 (MQ=255)                                   tAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTGATGGCATCTGCACtt                                                                                                         >  2:500162/1‑150 (MQ=255)                                      gAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTcc                                                                                                                                               >  2:617201/1‑109 (MQ=255)                                      gAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTcc                                                                                                                                               <  1:617201/109‑1 (MQ=255)                                        aaTGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATc                                                                                                    >  1:177776/1‑150 (MQ=255)                                         aTGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCa                                                                                                   >  1:268718/1‑150 (MQ=255)                                          tGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTCCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAg                                                                                                  <  1:1214094/150‑1 (MQ=255)                                          tGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCaa                                                                                                  >  2:1391118/1‑149 (MQ=255)                                              tGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCa                                                                                                            <  1:560018/136‑1 (MQ=255)                                              tGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCa                                                                                                            >  2:560018/1‑136 (MQ=255)                                               gAAAATAAAGAAAATGACGCCGACACCCGTAGAAGGAGTTTTACCCTCAAACACGGGCTGAGCACTTGCCATCGACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCAt                                                                                             >  2:16188/1‑150 (MQ=255)                                               gAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCATTTCAATCAGGCCac                                                                                             >  2:791743/1‑149 (MQ=255)                                               gAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCAt                                                                                             >  1:378176/1‑150 (MQ=255)                                                      aaGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCGCGCGGGCTCCCACAGATGATGCGGGTACGCCTTATGGCGTCTGCACTTCGATTACCCCATCGGCCtt                                                                                      >  2:299760/1‑150 (MQ=37)                                                          aaaTGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATg                                                                                  <  1:771288/150‑1 (MQ=255)                                                           aaTGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCTGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGc                                                                                 <  2:1045300/150‑1 (MQ=255)                                                                 gCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCtcactt                                                                           <  2:721316/150‑1 (MQ=255)                                                                 gCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCtcactt                                                                           >  1:601286/1‑150 (MQ=255)                                                                  cAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTc                                                                                     >  1:118073/1‑139 (MQ=255)                                                                  cAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTc                                                                                     <  2:118073/139‑1 (MQ=255)                                                                     tCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCtcacttcact                                                                       <  2:794147/150‑1 (MQ=255)                                                                     tCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCtcacttcact                                                                       >  1:936090/1‑150 (MQ=255)                                                                        cccGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGt                                                                    >  2:1178643/1‑150 (MQ=255)                                                                        acgcatcatctgtgggagcccgcgagcaagacacggcggtggatggcacgggcttcgcccgtgttcgcgggCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGt                                                                    >  2:1296900‑M2/72‑150 (MQ=255)                                                                          cGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACtt                                                                                                         <  2:369174/111‑1 (MQ=255)                                                                          cGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACtt                                                                                                         >  1:369174/1‑111 (MQ=255)                                                                          cGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCACCAAGGTGATACGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGtgc                                                                  >  1:1240614/1‑150 (MQ=38)                                                                           gTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAga                                                                                                                                         >  1:1311108/1‑78 (MQ=255)                                                                           gTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAga                                                                                                                                         <  2:1311108/78‑1 (MQ=255)                                                                              ttcgCGGGTAAACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGtgcctgc                                                              <  2:575394/147‑1 (MQ=255)                                                                                 gCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTc                                                           <  2:601286/150‑1 (MQ=255)                                                                                          CCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGAc                                                                                                                             <  1:194060‑M1/75‑1 (MQ=255)                                                                                          CCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGAc                                                                                                                             >  2:194060‑M1/1‑75 (MQ=255)                                                                                           ccgcgagcaagacacggcggtggatggcacgggcttcgcccgtgttcgcgggCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGgc                                                 >  1:734758‑M2/53‑150 (MQ=255)                                                                                           ccgcgagcaagacacggcggtggatggcacgggcttcgcccgtgttcgcgggCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGgc                                                 >  2:491139‑M2/53‑150 (MQ=255)                                                                                           CCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATc                                                                                                                >  2:1398943‑M1/1‑87 (MQ=255)                                                                                           CCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATc                                                                                                                <  1:1398943‑M1/87‑1 (MQ=255)                                                                                           CCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGgc                                                 <  1:149013‑M1/150‑1 (MQ=255)                                                                                             GCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGgcgc                                               <  1:581803‑M1/150‑1 (MQ=255)                                                                                             GCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGgcgc                                               <  2:1043108‑M1/150‑1 (MQ=255)                                                                                                  cacGGGCTTCGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAgg                                                                                                 <  1:280223/95‑1 (MQ=255)                                                                                                   acGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGGCGCCGGtgc                                         <  1:1043108/150‑1 (MQ=255)                                                                                                    agacacggcggtggatggcacgggcttcgcccgtgttcgcgggCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGGCGCCGGtgct                                        <  2:734758‑M2/107‑1 (MQ=255)                                                                                                     gggCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGGCGCCGGtgctg                                       >  1:803895/1‑150 (MQ=255)                                                                                                               cGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGGCGCCGGTGCTGCTTCACCAGc                             <  1:1178643/150‑1 (MQ=255)                                                                                                                gTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGGCGCCGGTGCTGCTTCATCAGcc                            <  1:299760/150‑1 (MQ=255)                                                                                                                     aTCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGGCGCCGGTGCTGCTTCATCAGCCCCCAt                       >  1:186625/1‑150 (MQ=255)                                                                                                                      tCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGGCGCCGGTGCTGCTTCATCAGCCCCCATg                      >  2:352023/1‑150 (MQ=255)                                                                                                                           cgccgTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCa                                                                                        <  2:1175633/79‑1 (MQ=255)                                                                                                                           cgccgTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCa                                                                                        >  1:1175633/1‑79 (MQ=255)                                                                                                                                          gcgggCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGACCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGGCGCCGGTGCTGCTTCATCAGCCCCCATGGCCTTCATCGCCATCGgcgc  >  1:45896‑M2/6‑150 (MQ=255)                                                                                                                                               |                                                                                                                                                 TAGGGGAAAGCGTAGGATGCATCCTAATGGTGCGTAAGAAATGTCTGAAAATAAAGAAAATGACGCAGTCACCCGTAGGAGCGGGTTTACCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCCGTGTCTTGCTCGCGGGCTCCCACAGATGATGCGTGGACGCCTTATGGCATCTGCACTTCGATCAGGCCATCGGCATTCATGCTCACTTCACTGGTGCCTGCCTCGATATCTGGCGCCGGTGCTGCTTCATCAGCCCCCATGGCCTTCATCGCCATCGGCGC  >  NC_002947/1028956‑1029242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.