| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1149932 | 53 (1.010) | 6 (0.120) +C |
4/244 | NT | 11.4% | intergenic (‑173/+84) | PP_1008/gapA | RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase |
| ? | NC_002947 | 2071211 = | 41 (0.780) | intergenic (+120/+107) | PP_1846/PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor | |||||
GATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCG > NC_002947/2071064‑2071355 | gacaagcgttactggcgcgatgtgggggattacctgggggataactacctgttccagggggcaccgcgtaccgctcggctttcggcttcgatcagcttctagattgccggggccgctctgcggccctttcgcgacctgtgggAGCGGGCt < 1:517573‑M1/8‑1 (MQ=255)gATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCtt > 2:382825/1‑150 (MQ=255) gcgctactggcgcgatgtgggggattacctgggggataactacctgttccagggggcaccgcgtaccgctcggctttcggcttcgatcagcttctagattgccggggccgctctgcggccctttcgcgacctgtgggAGCGGGCTTGccc < 2:902427‑M1/13‑1 (MQ=255) cgttactggcgcgatgtgggggattacctgggggataactacctgttccagggggcaccgcgtaccgctcggctttcggcttcgatcagcttctagattgccggggccgctctgcggccctttcgcgacctgtgggAGCGGGCTTGCCcg < 2:409507‑M1/14‑1 (MQ=255) ccGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGTCTTGCCcgc > 1:928974/1‑150 (MQ=255) ccGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCcgc > 2:102529/1‑150 (MQ=255) ttactggcgcgatgtgggggattacctgggggataactacctgttccagggggcaccgcgtaccgctcggctttcggcttcgatcagcttctagattgccggggccgctctgcggccctttcgcgacctgtgggAGCGGGCTTGCCcgcg < 1:869536‑M1/16‑1 (MQ=255) gCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGa < 1:86270/149‑1 (MQ=255) gCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGa > 2:86270/1‑149 (MQ=255) ttAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGc > 2:613467/1‑150 (MQ=255) ccTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCgtggt < 1:789262/150‑1 (MQ=255) ccTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCgtggt < 1:1065130/150‑1 (MQ=255) tGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGtggtgg > 2:1173093/1‑150 (MQ=255) tACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCt > 2:1309652/1‑150 (MQ=255) atcaggaaaaggtaaagattgtagtcactggatgccgtttgctttttttgggagcaactgtcttgctcaatttctaaaagctggcgcgatccctgggggagcggcCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGcc > 1:487328‑M2/106‑150 (MQ=255) aCCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGccc < 1:801820/150‑1 (MQ=255) gTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCgtg > 2:1255277/1‑150 (MQ=255) aCGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTcgcg < 2:1412927/150‑1 (MQ=255) aCGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTcgcg < 1:974666/150‑1 (MQ=255) gtaaagattgtagtcactggatgccgtttgctttttttgggagcaactgtcttgctcaatttctaaaagctgacgcgacccgtgtgggagcggcCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCgg > 2:1175119‑M2/95‑150 (MQ=255) ggtggtGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCGTTGGCGCTACTTTTCATCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCggg < 1:878633/150‑1 (MQ=37) agggggcaccgcgtaccgctcggctttcggcttcgatcagcttctagattgccggggccgctctgcggccctttcgcgacctgtgggAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCggg < 2:307438‑M1/63‑1 (MQ=255) gtgtGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAg > 2:700662/1‑150 (MQ=255) gggtgAGAGGACGGCGGGTGTGAATCCGCCTCCTAC‑CGAGGTTCCAGGGCCATTGGGGCTGCTGTGCAGCCCATCCCAACACAACCGGGC‑TGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGc < 1:74673/148‑1 (MQ=25) gggcaccgcgtaccgctcggctttcggcttcgatcagcttctagattgccggggccgctctgcggccctttcgcgacctgtgggAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCaa > 1:307438‑M1/85‑150 (MQ=255) gggcaccgcgtaccgctcggctttcggcttcgatcagcttctagattgccggggccgctctgcggccctttcgcgacctgtgggAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCaa > 1:1377840‑M1/85‑150 (MQ=255) tgtagtcactggatgccgtttgctttttttgggagcaactgtcttgctcaatttctaaaagctggcgcgatccctgggggagcggcCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGccc < 2:487328‑M2/64‑1 (MQ=255) ccgcgtaccgctcggctttcggcttcgatcagcttctagattgccggggccgctctgcggccctttcgcgacctgtgggAGCGGGc < 1:704864‑M1/7‑1 (MQ=255) ccgcgtaccgctcggctttcggcttcgatcagcttctagattgccggggccgctctgcggccctttcgcgacctgtgggAGCGGGc > 2:704864‑M1/80‑86 (MQ=255) gatgccgtttgctttttttgggagcaactggcttgctcaatttctaaaagctggcgcgatccctgggggagcggcTTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCCCAgg < 2:525884‑M2/75‑1 (MQ=255) aaTCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGaaa > 1:646607/1‑150 (MQ=255) tCCGCCTCCTACTCGA‑TTTTCAGGGACATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAgg > 1:160377/1‑150 (MQ=255) cGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGTTGCTGTGCAGCCCATCGCGACACAAGCGGGCGTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGc < 1:219875/150‑1 (MQ=255) tcctACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCa > 1:1115042/1‑150 (MQ=255) tCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAGGGGCCGctctgcgg > 1:209716/1‑143 (MQ=255) tCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCgg > 1:953686/1‑150 (MQ=255) ttctagattgccggggccgctctgcggccctttcgcgacctgtgggAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCgg < 1:359137‑M1/62‑1 (MQ=255) ttctagattgccggggccgctctgcggccctttcgcgacctgtgggAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCgg > 2:359137‑M1/47‑108 (MQ=255) aGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGcta > 1:523003/1‑148 (MQ=255) ggCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCACCTCCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTcgc < 2:550904/121‑1 (MQ=255) ggCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTcgc > 1:550904/1‑121 (MQ=255) aTTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCTATCTAGa < 2:523003/150‑1 (MQ=255) aTTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGa > 2:102337/1‑150 (MQ=255) ttGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCGGAGCGGCCCCGGCAATCTAGaa < 1:102529/150‑1 (MQ=255) ttGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGaa < 1:39673/150‑1 (MQ=255) ttGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGaa < 2:646607/150‑1 (MQ=255) gggggCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAg < 1:1297756/149‑1 (MQ=255) tgctgTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCCCGGGCTTCGCCCGTGTTCGCGGGCAAGCCAACACCCAAAGGGCGCCAAATTGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATc > 2:945063/1‑150 (MQ=25) gCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCggg < 2:497159/78‑1 (MQ=255) gCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCggg > 1:497159/1‑78 (MQ=255) cccATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaa > 2:1324559/1‑150 (MQ=255) ccATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaag < 1:102337/150‑1 (MQ=255) aTCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaagcc > 2:328599/1‑150 (MQ=255) cgcgACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaagccga < 2:160377/150‑1 (MQ=255) cgcgACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaagccga < 1:382825/150‑1 (MQ=255) gACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCg > 1:1115399/1‑150 (MQ=255) gagcggcCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCg > 1:560207‑M2/8‑54 (MQ=255) gagcggcCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCg < 2:560207‑M2/47‑1 (MQ=255) aaGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAcg > 2:1165820/1‑150 (MQ=255) GCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAcgcg > 1:1255277‑M1/1‑150 (MQ=255) | GATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGA‑TTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCG > NC_002947/2071064‑2071355 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |