New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1190141	43 (0.820)	4 (0.080)	4/236	NT	8.2%	coding (199/234 nt)	tatA‑I	twin arginine protein export complex subunit
	?	NC_002947	= 1190161	48 (0.950)					coding (179/234 nt)	tatA‑I	twin arginine protein export complex subunit

CTGCCACCGGCAGGCGCTCGGGGCCCAGCACCAACAGCGCGACGACGCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCAAACAGCAAGAACACGATCAGCAGTACGATC  >  NC_002947/1190022‑1190310                                                                                                                                            |                                                                                                                                                       cTGCCACCGGCAGGCGCTCGGGGCCCAGCACCAACAGCGCGACGACGCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGcac                                                                                                                                              <  2:818016/150‑1 (MQ=255)    ccACCGGCAGGCGCTCGGGGCCCAGCACCAACAGCGCGACGACGCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑Tg                                                                                                                                          >  2:1384648/1‑150 (MQ=255)     cACCGGCAGGCGCTCGGGGCCCAGCACCAACAGCGCGACGACGCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑Tgc                                                                                                                                         >  2:1328840/1‑150 (MQ=255)      aCCGGCAGGCGCTCGGGGCCCAGCACCAACAGCGCGACGACGCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑Tgcg                                                                                                                                        >  1:934191/1‑150 (MQ=255)        cGGCAGGCGCTCGGGGCCCAGCACCAACAGCGCGACGACGCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGcc                                                                                                                                      <  2:1166264/150‑1 (MQ=255)         ggCAGGCGCTCGGGGCCCAGCACCAACAGCGCGACGACGCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCt                                                                                                                                     >  2:954392/1‑150 (MQ=255)                gcTCGGGGCCCAGCACCAACAGCGCGACGACGCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAgc                                                                                                                              <  1:691072/150‑1 (MQ=255)                         ccAGCACCAACAGCGCGACGACGCCGATCAGCAGCAACTCGCTGAAGCCTACATCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGc                                                                                                                     >  2:1010164/1‑150 (MQ=255)                                naaCAGCGCGACGACGCCGATCAGCAGCAACTCGCTGAAGCCTACCTNGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGCGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTg                                                                                                              >  1:303015/2‑150 (MQ=255)                                     gcgcGACGACGCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTcacc                                                                                                         >  2:956104/1‑150 (MQ=255)                                         gacgacGCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCAccc                                                                                                     <  1:956104/150‑1 (MQ=255)                                           cgacgCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCAt                                                                                                   <  2:1341762/150‑1 (MQ=255)                                              cgCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCAt                                                                                                                <  2:766021/134‑1 (MQ=255)                                              cgCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCAt                                                                                                                >  1:766021/1‑134 (MQ=255)                                               gCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGAc                                                                                               >  2:119171/1‑150 (MQ=255)                                               gCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGAc                                                                                               >  1:560116/1‑150 (MQ=255)                                                       gcagcaACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGaaa                                                                                       >  1:158076/1‑150 (MQ=255)                                                       gcagcaACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGaaa                                                                                       >  2:585546/1‑150 (MQ=255)                                                           caACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCGGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGGCTTGCGAAAAccc                                                                                   >  2:192277/1‑150 (MQ=255)                                                            aaCTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCt                                                                                  <  2:1035892/150‑1 (MQ=255)                                                                  cTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGAACGATTGTCACCACCCATGGACTTGCGAAAACCCTGGAtcg                                                                            >  1:1084825/1‑150 (MQ=255)                                                                   tGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGAtcgc                                                                           <  2:134692/150‑1 (MQ=255)                                                                             cTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAgc                                                                                                                              <  2:288171/89‑1 (MQ=255)                                                                             cTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAgc                                                                                                                              >  1:288171/1‑89 (MQ=255)                                                                             cTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCcgca                                                                 >  1:675274/1‑150 (MQ=255)                                                                              tCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACAt                                                                >  2:911491/1‑150 (MQ=255)                                                                                 aaCATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCcaca                                                                 <  1:859810/146‑1 (MQ=255)                                                                                 aaCATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCcaca                                                                 >  2:859810/1‑146 (MQ=255)                                                                                            tGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGccc                                                  >  1:476292/1‑150 (MQ=255)                                                                                              gCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGc                                                                                           <  1:1199045/107‑1 (MQ=255)                                                                                              gCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGc                                                                                           >  2:1199045/1‑107 (MQ=255)                                                                                                ggTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCa                                              <  2:158076/150‑1 (MQ=255)                                                                                                        tGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTg                                      <  1:585546/150‑1 (MQ=255)                                                                                                        tGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTg                                      <  2:675274/150‑1 (MQ=255)                                                                                                            aTTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTAc                                  <  2:560116/150‑1 (MQ=255)                                                                                                              tGCTGGGCAACTTGGCCGTTCAGCGGGCACTgttgcccagcaacctcaagcggaccgccaggcctgatgttcgaggtaggcttcagcgagttgctgctgatcggcgtcgtcgcgctgttgg                                                              >  1:816729‑M2/1‑31 (MQ=255)                                                                                                              tGCTGGGCAACTTGGCCGTTCAGCGGGCACTgttgcccagcaacctcaagcggaccgccaggcctgatgttcgaggtaggcttcagcgagttgctgctgatcggcgtcgtcgcgctgttgg                                                              <  2:816729‑M2/121‑91 (MQ=255)                                                                                                                cTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCaaa                              <  2:476292/150‑1 (MQ=255)                                                                                                                  gggCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTg                                                                                 <  1:40113/97‑1 (MQ=255)                                                                                                                  gggCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTg                                                                                 >  2:40113/1‑97 (MQ=255)                                                                                                                  gggCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCAAACa                            <  1:1010571/150‑1 (MQ=255)                                                                                                                         ttGGCCGTTCAGCGGGCACTgttgcccagcaatctcaagcggaccgccaggcctgatgttcga                                                                                                             <  2:79818‑M2/63‑44 (MQ=255)                                                                                                                         ttGGCCGTTCAGCGGGCACTgttgcccagcaatctcaagcggaccgccaggcctgatgttcga                                                                                                             >  1:79818‑M2/1‑20 (MQ=255)                                                                                                                           ggCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCAAACAGCAAGAaca                   <  1:119171/150‑1 (MQ=255)                                                                                                                           ggCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCAAACAGCAAGAaca                   <  1:911491/150‑1 (MQ=255)                                                                                                                           ggCCGTTCAGCGGCCACTGTTGCTG‑ACACTGGGCGCCTTCTACCACGCGGTCGTGATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCAAACAGCAAGAaca                   <  2:1084825/150‑1 (MQ=255)                                                                                                                              cGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCAAACAGCAAGAACACGa                >  2:302688/1‑150 (MQ=255)                                                                                                                               gTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCAAACa                            <  2:169285/137‑1 (MQ=255)                                                                                                                               gTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCAAACa                            >  1:169285/1‑137 (MQ=255)                                                                                                                                   aGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCAAACAGCAAGAACACGATcagc           <  1:1010164/150‑1 (MQ=255)                                                                                                                                    gCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGAtcgcctcgc                                                                      >  2:633352/1‑90 (MQ=255)                                                                                                                                    gCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGAtcgcctcgc                                                                      <  1:633352/90‑1 (MQ=255)                                                                                                                                    gCGGGCACTGTTGCTGCACA‑TGCACCTGGTCAGCGGCGCTGGCGTCATTGTCACCACTCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCTTTCAGGCGCTTGGTACCAAACAGCAAGAACACGATcagca          >  1:1225374/1‑150 (MQ=255)                                                                                                                                        gCACTGTTGCTGCACA‑TGCGCCTAGTCAGCGGCGCCGGCGTCAGGGTCACCACCCATGGACTTGCGAAAACCCTGCATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCAAACAGCAAGAACACGATCAGCAGTAc      <  1:1384648/150‑1 (MQ=255)                                                                                                                                            tGTTGCTGCACA‑TGCACCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCAAACAGCAAGAACACGATCAGCAGTACGATc  >  1:605622/1‑150 (MQ=255)                                                                                                                                            |                                                                                                                                                       CTGCCACCGGCAGGCGCTCGGGGCCCAGCACCAACAGCGCGACGACGCCGATCAGCAGCAACTCGCTGAAGCCTACCTCGAACATCAGGCCTGGCGGTCCGCTTGAGATTGCTGGGCAACTTGGCCGTTCAGCGGGCACTGTTGCTGCACA‑TGCGCCTGGTCAGCGGCGCTGGCGTCATTGTCACCACCCATGGACTTGCGAAAACCCTGGATCGCCTCGCCCACATCGCTACCCAGGCCCTTCAGGCGCTTGGTACCAAACAGCAAGAACACGATCAGCAGTACGATC  >  NC_002947/1190022‑1190310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.