| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1364735 = | 51 (0.970) | 3 (0.060) | 3/240 | NT | 6.2% | intergenic (+99/+50) | dctA‑I/PP_1189 | C4‑dicarboxylate transport protein/hypothetical protein |
| ? | NC_002947 | 1364793 = | 41 (0.800) | coding (691/699 nt) | PP_1189 | hypothetical protein | |||||
TTGAAATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCTGCGCCAGGCATTGCTCGATTAGC > NC_002947/1364644‑1364938 | ttGAAATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAg < 2:853228/150‑1 (MQ=255) gAAATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTa < 1:1244293/150‑1 (MQ=255) aTGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGAGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCa > 2:820766/1‑150 (MQ=255) cgaaaaaGGCGACCTTTGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCAc > 2:17078/5‑150 (MQ=37) aCCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACAccc < 1:820766/150‑1 (MQ=255) ttggTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGAt < 2:886032/148‑1 (MQ=255) aaGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGAt < 2:687141/150‑1 (MQ=255) tCGCCTTTTTTTTGTTATTGCGGACCCTTGTGGGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGTGATCTGGCTTGCCCTCGAACACTTTCGAAGCCTGTGGCCCTCATCCCAGTACCACTTCCAACACCCGGATGACg > 2:653713/1‑150 (MQ=255) cTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGTGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCg > 1:537288/1‑150 (MQ=255) gtgtTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCgg > 2:977172/1‑150 (MQ=255) cTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTAc < 1:555443/150‑1 (MQ=255) gCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATc > 1:402213/1‑150 (MQ=255) ccTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATcc > 1:447201/1‑150 (MQ=255) cTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTAc < 2:83117/139‑1 (MQ=255) cTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTAc > 1:83117/1‑139 (MQ=255) ttGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCa < 2:447201/150‑1 (MQ=255) cAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACt > 2:1053363/1‑150 (MQ=255) aaTTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTc < 1:598471/90‑1 (MQ=255) aaTTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTc > 2:598471/1‑90 (MQ=255) aaTTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCAc < 2:20949/127‑1 (MQ=255) aaTTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCAc > 1:20949/1‑127 (MQ=255) aaTTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCt < 2:545979/129‑1 (MQ=255) aaTTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCt > 1:545979/1‑129 (MQ=255) aaaGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGt > 1:70783/1‑150 (MQ=255) aaaGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCCAACACGGGCGAAGCCCGTGGCCCTCAG‑CCAGTACCACTTCCAACACCCGGATTGCGTCCGGCCGCGGGGAAAGGCACCCTTCTTGCCCATCCCTCGGCGTCACCCCGTa > 1:1358815/1‑150 (MQ=25) cTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTacac > 1:1252269/1‑150 (MQ=255) ggCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCTCCCCGTACAccc < 2:1061659/150‑1 (MQ=255) cgATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTc < 1:17078/150‑1 (MQ=255) ttGGAATGTGGGAGCGGGCTTGCCCGAGATCACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGa < 1:653713/150‑1 (MQ=255) gctgagggccacgggcttcgcccgtgttcgcgggcaagcccgctcccacagtccaGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACggt > 1:920873‑M2/56‑150 (MQ=255) aCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACggt > 1:623912/1‑150 (MQ=255) ctgagggccacgggcttcgcccgtgttcgcgggcaagcccgctcccacagtccaGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCAc > 1:1288996‑M2/55‑101 (MQ=255) ctgagggccacgggcttcgcccgtgttcgcgggcaagcccgctcccacagtccaGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCAc < 2:1288996‑M2/47‑1 (MQ=255) cTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACggtg < 1:523005/150‑1 (MQ=255) gggCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTa < 1:955037/150‑1 (MQ=255) ttGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCAcccc > 1:1039020/1‑116 (MQ=255) ttGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCAcccc < 2:1039020/116‑1 (MQ=255) ttGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAggcc > 2:1154337/1‑150 (MQ=255) gAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTgg < 1:977172/150‑1 (MQ=255) gggCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCtt > 2:1110722/1‑149 (MQ=255) gAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCTGCGcc > 1:274894/1‑150 (MQ=255) gCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCTGCGCCAgg > 1:395931/1‑150 (MQ=255) tGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCTGCGCCAGGCATTg > 2:1162283/1‑150 (MQ=255) cTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAAt > 2:283340/1‑51 (MQ=255) cTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAAt < 1:283340/51‑1 (MQ=255) cTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCTGCGCCAGGCATTGCTCGa > 1:523626/1‑150 (MQ=255) aGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCTGCGCCAGGCATTGCTCGATTa > 1:1321409/1‑150 (MQ=255) cccAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCTGCGCCAGGCATTGCTCGATTAGc < 1:1263080/150‑1 (MQ=255) | TTGAAATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCTGCGCCAGGCATTGCTCGATTAGC > NC_002947/1364644‑1364938 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |