New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1657077 =	50 (0.950)	3 (0.060)	3/230	NT	6.5%	coding (1459/1698 nt)	PP_1450	TPS family activation/secretion protein
	?	NC_002947	1657116 =	40 (0.810)					coding (1420/1698 nt)	PP_1450	TPS family activation/secretion protein

GCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGCCAGCGCCAAGGGCTGGGTGCCGGGCCT  >  NC_002947/1656968‑1657258                                                                                                                                                     |                                                                                                                                               gcggcgGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGctgctg                                                                                                                                               >  2:1001684/1‑150 (MQ=255)         cccGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGa                                                                                                                                       <  2:604532/150‑1 (MQ=255)         cccGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGa                                                                                                                                       <  1:122356/150‑1 (MQ=255)              ccAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAg                                                                                                                                  >  1:788994/1‑150 (MQ=255)              ccAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAg                                                                                                                                  <  2:712983/150‑1 (MQ=255)                   cgcTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGc                                                                                                                             <  1:1047691/150‑1 (MQ=255)                      tgtgACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGa                                                                                                                          <  1:254017/150‑1 (MQ=255)                        tgACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACg                                                                                                                        >  1:204370/1‑150 (MQ=255)                          aCGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGaa                                                                                                                      <  2:366043/150‑1 (MQ=255)                              tttGCCTTCGGCGCTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGCCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGcc                                                                                                                  <  1:425549/150‑1 (MQ=255)                                tGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCcgc                                                                                                                <  1:1065144/150‑1 (MQ=255)                                 gCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCcgcg                                                                                                               <  1:745754/150‑1 (MQ=255)                                   cTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGa                                                                                                             <  1:1245945/150‑1 (MQ=255)                                   cTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACATATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGa                                                                                                             >  1:1164579/1‑150 (MQ=255)                                    ttCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGCAc                                                                                                            >  1:1044163/1‑150 (MQ=255)                                     tCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGCCa                                                                                                           <  2:709825/150‑1 (MQ=255)                                      cggcggTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAg                                                                                                          <  2:499134/150‑1 (MQ=255)                                       ggcggTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGc                                                                                                         <  2:788994/150‑1 (MQ=255)                                        gcggTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAATCCGCGGACAGcc                                                                                                        <  1:49181/150‑1 (MQ=255)                                               gAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAAtcgt                                                                                                 <  1:1001684/150‑1 (MQ=255)                                                aaCCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAAtcgtc                                                                                                >  1:1204515/1‑150 (MQ=255)                                                aaCCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAAtcgtc                                                                                                <  1:498999/150‑1 (MQ=255)                                                 aCCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGa                                                                                                             <  2:1316317/136‑1 (MQ=255)                                                 aCCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGa                                                                                                             >  1:1316317/1‑136 (MQ=255)                                                 aCCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAAtcgtcg                                                                                               <  2:1204515/150‑1 (MQ=255)                                                  cccagcccagGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAgt                                                                                                                                 >  1:358339/1‑115 (MQ=255)                                                  cccagcccagGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAgt                                                                                                                                 <  2:358339/115‑1 (MQ=255)                                                      gcccagGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGAc                                                                                          <  2:1330822/150‑1 (MQ=255)                                                          agGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACcagc                                                                                      <  1:512881/150‑1 (MQ=255)                                                                      aTGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACg                                                                          >  2:1096961/1‑150 (MQ=255)                                                                         tAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACggca                                                                       <  1:229470/150‑1 (MQ=255)                                                                                 tATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCgg                                                               <  2:204370/150‑1 (MQ=255)                                                                                   tctcGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGt                                                             >  2:829716/1‑150 (MQ=255)                                                                                     tcGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTCCGCCAGACGGCGCTGCTTGCACCGGAGTCAGTGAGCAGCCGAAAGACGCGAAGATCCGATTCGTGGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCa                                                           <  1:1096961/150‑1 (MQ=255)                                                                                       gAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACg                                                         >  2:1357551/1‑150 (MQ=255)                                                                                          gcacacttactccggtgccaGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAgt                                                                                                                                 >  2:634973‑M1/21‑75 (MQ=255)                                                                                          gcacacttactccggtgccaGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAgt                                                                                                                                 <  1:634973‑M1/55‑1 (MQ=255)                                                                                            gTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGt                                                    >  2:325005/1‑150 (MQ=255)                                                                                              acttactccggtgccagcagcgccgtctggcgcaatacgttcagccaggcgctgcTGGCACCGGAGTAAGTGTGc                                                                                                                             >  2:634973‑M2/56‑75 (MQ=255)                                                                                              acttactccggtgccagcagcgccgtctggcgcaatacgttcagccaggcgctgcTGGCACCGGAGTAAGTGTGc                                                                                                                             <  1:634973‑M2/20‑1 (MQ=255)                                                                                               gggCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACt                                                 <  1:22689/150‑1 (MQ=255)                                                                                                    cAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATg                                            >  1:987728/1‑150 (MQ=255)                                                                                                              gcagcgccgtctggcgcaatacgttcagccaggcgctgcTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAgctcgc                                  >  1:1150422‑M2/40‑150 (MQ=255)                                                                                                              GCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAgctcgc                                  <  2:302703‑M1/150‑1 (MQ=255)                                                                                                               CAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAgt                                                                                                                                 >  2:961409‑M1/1‑54 (MQ=255)                                                                                                               CAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAgt                                                                                                                                 <  1:961409‑M1/54‑1 (MQ=255)                                                                                                                AGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAg                                                                                                                           <  2:636710‑M1/59‑1 (MQ=255)                                                                                                                AGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAg                                                                                                                           >  1:636710‑M1/1‑59 (MQ=255)                                                                                                                 GCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACggca                                                                       <  2:1077145‑M1/110‑1 (MQ=255)                                                                                                                 GCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACggca                                                                       >  1:1077145‑M1/1‑110 (MQ=255)                                                                                                                     CTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGc                             >  1:868121‑M1/1‑148 (MQ=255)                                                                                                                     CTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGc                             <  2:868121‑M1/148‑1 (MQ=255)                                                                                                                           gAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGCCAGCGCCa                     >  2:1068576/1‑150 (MQ=255)                                                                                                                                      gcCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTa                                                   >  2:1049943/1‑109 (MQ=255)                                                                                                                                      gcCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTa                                                   <  1:1049943/109‑1 (MQ=255)                                                                                                                                            cGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATCGCCAGCTCGCTCTGCCAGCGCCAAGGGCTGGGTGCCGGGc    <  1:1357551/150‑1 (MQ=255)                                                                                                                                             ggcgctgcTGGCACCGGAGTAAGTGTGCAGACGAATGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGCCAGCGCCAAGGGCTGGGTGCCGGGcc   >  2:685387‑M2/9‑150 (MQ=255)                                                                                                                                              gcgctgcTGGCACCGGAGTAAGTGTGCAGACGAATGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGCCAGCGCCAAGGGCTGGGTGCCGGGCCt  <  1:685387‑M2/143‑1 (MQ=255)                                                                                                                                                  tgcTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACggc                                                                        <  1:94624‑M2/73‑1 (MQ=255)                                                                                                                                                  tgcTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACggc                                                                        >  2:94624‑M2/4‑76 (MQ=255)                                                                                                                                                     |                                                                                                                                               GCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGCCAGCGCCAAGGGCTGGGTGCCGGGCCT  >  NC_002947/1656968‑1657258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.