New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1928307	53 (1.010)	4 (0.080)	4/236	NT	7.6%	coding (1827/2154 nt)	PP_1728	membrane protein
	?	NC_002947	= 1928327	46 (0.910)					coding (1807/2154 nt)	PP_1728	membrane protein

CCCTGCAGCTCGAGCGGCGACCAGATATTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAGGTGGCCGCCGACATCCACATAGTCGTCGATGGCCAGC  >  NC_002947/1928182‑1928475                                                                                                                                                  |                                                                                                                                                      cccTGCAGCTCGAGCGGCGACCAGATATTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCccgc                                                                                                                                                   >  2:362992‑M2/1‑146 (MQ=255)  ccTGCAGCTCGAGCGGCGACCAGATATTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCccgcg                                                                                                                                                  <  1:795735‑M2/150‑6 (MQ=255)   cTGCAGCTCGAGCGGCGACCAGATATTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGa                                                                                                                                                 >  1:841029/1‑150 (MQ=255)   cTGCAGCTCGAGCGGCGACCAGATATTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGAGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGa                                                                                                                                                 <  2:573966/150‑1 (MQ=255)       aGCTCGAGCGGCGACCAGATATTACGGCGCATCAGCGGGTCGTCGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGagtag                                                                                                                                             <  1:155031/150‑1 (MQ=255)       aGCTCGAGCGGCGACCAGATATTACGGCGCATCAGCGGGTCGGTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGagtag                                                                                                                                             >  2:487110/1‑150 (MQ=255)          tCGAGCGGCGACCAGATATTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTc                                                                                                                                          <  2:118096/150‑1 (MQ=255)           cGAGCGGCGACCAGATATTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCt                                                                                                                                         <  1:745507/150‑1 (MQ=255)                ggcgACAAGATATTACGGCGCATCAGCGTGTCGTTGCTCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATg                                                                                                                                    <  2:1375009/150‑1 (MQ=255)                   gACCAGATATTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCt                                                                                                                                         <  2:224241/142‑1 (MQ=255)                   gACCAGATATTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCt                                                                                                                                         >  1:224241/1‑142 (MQ=255)                   gACCAGATATTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGctc                                                                                                                                 >  1:1075346/1‑150 (MQ=255)                    aCCAGATATTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGGAGTTCGGCTACGCGATCTTccgcgtggcaatcccgcacagca                                                                                                                                >  2:997012‑M2/1‑127 (MQ=255)                          tatTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGAttt                                                                                                                          <  1:199228/150‑1 (MQ=255)                             tACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGc                                                                                                                       <  1:1387859/150‑1 (MQ=255)                              aCGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCt                                                                                                                      >  1:1249624/1‑150 (MQ=255)                                                   gcgcAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGAt                                                                                                 <  2:1052082/150‑1 (MQ=255)                                                     gcAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGc                                                                                               >  1:534580/1‑150 (MQ=255)                                                           tCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGa                                                                                         <  2:1063670/150‑1 (MQ=255)                                                               ccccACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTc                                                                                     >  1:1225771/1‑150 (MQ=255)                                                               ccccACTTCGCGAAACAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGAt                                                                                                             <  2:850376/126‑1 (MQ=255)                                                               ccccACTTCGCGAAACAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGAt                                                                                                             >  1:850376/1‑126 (MQ=255)                                                                 ccACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTcgc                                                                                   >  1:237506/1‑150 (MQ=255)                                                                 ccACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTcgc                                                                                   <  1:988057/150‑1 (MQ=255)                                                                      tCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑gg                                                                             <  2:623321/150‑1 (MQ=255)                                                                             ccAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACgg                                                                      >  1:85944/1‑150 (MQ=255)                                                                               aGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTa                                                                    >  2:1344488/1‑150 (MQ=255)                                                                                         ccTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGAACGGTACGAATGGTCa                                                          >  1:241561/1‑150 (MQ=255)                                                                                              tCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCt                                                     >  1:981019/1‑150 (MQ=255)                                                                                               gcctGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCtt                                                    >  2:1285909/4‑150 (MQ=255)                                                                                                gATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTc                                                   <  1:1117914/150‑1 (MQ=255)                                                                                                gATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGCAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTc                                                   >  1:1266667/1‑150 (MQ=255)                                                                                                           tgtgCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGTCGa                                        <  2:1225771/150‑1 (MQ=255)                                                                                                            gtgCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAg                                       <  1:1277537/150‑1 (MQ=255)                                                                                                             tgCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAgg                                      <  2:795735/150‑1 (MQ=255)                                                                                                              gCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAg                                       >  1:687417/1‑148 (MQ=255)                                                                                                              gCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAg                                       <  2:687417/148‑1 (MQ=255)                                                                                                              gCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAGGt                                     <  2:1075346/150‑1 (MQ=255)                                                                                                               cGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGAGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAGGTg                                    <  1:1355896/150‑1 (MQ=255)                                                                                                                      gCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAGGTGGccgccg                             >  2:40737/1‑150 (MQ=255)                                                                                                                      gCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAGGTGGccgccg                             <  1:40737/150‑1 (MQ=255)                                                                                                                       ccACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGa                                        <  2:763924/138‑1 (MQ=255)                                                                                                                       ccACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGa                                        >  1:763924/1‑138 (MQ=255)                                                                                                                        cACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAGGTGGCCGCCGAc                           >  2:1982/1‑150 (MQ=255)                                                                                                                         aCGCGGAAGATCGCGTAGCCGAACTCccgcgtggcaatcccgcacagcatgaacatcgaccaggcgatctcgctggttcgcgaagtggggcagaagctgc                                                                             >  2:215801‑M2/1‑26 (MQ=255)                                                                                                                         aCGCGGAAGATCGCGTAGCCGAACTCccgcgtggcaatcccgcacagcatgaacatcgaccaggcgatctcgctggttcgcgaagtggggcagaagctgc                                                                             <  1:215801‑M2/100‑75 (MQ=255)                                                                                                                         aCGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGAt                                                                                        >  1:1099737/1‑89 (MQ=255)                                                                                                                         aCGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGAt                                                                                        <  2:1099737/89‑1 (MQ=255)                                                                                                                         aCGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTcgc                                                                                   <  2:467427/94‑1 (MQ=255)                                                                                                                         aCGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTcgc                                                                                   >  1:467427/1‑94 (MQ=255)                                                                                                                           gcgGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAGGTGGCCGCCGACATc                        <  1:487110/150‑1 (MQ=255)                                                                                                                           gcgGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTCCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCG‑GGCGGACGGTACGTATGGTCAACCCTTCCACCGTGCCGAGGTGGCCGCCGACATc                        <  2:761053/150‑1 (MQ=255)                                                                                                                            cgGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCCCGGTACGAATGGTCAACCCTTCCACCGTGCCGAGGTGGCCGCCGACATcc                       <  2:123876/150‑1 (MQ=255)                                                                                                                            cgGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAGGTGGCCGCCGACATcc                       <  2:1266667/150‑1 (MQ=255)                                                                                                                                       gTAGCCGAACTCccgcgtggcaatcccgcacagcatgaacatcgaccaggcgatctcgctggttcgcgaagtggggcagaagctgcgcaacgacccgctgatgcgccgtaatatctggtcgccgctcgagctgcagggggtggagagctt             >  1:997012‑M2/1‑12 (MQ=255)                                                                                                                                           ccGAACTCCCGCGAGTAGTTCTTGATGCTCTTGTTCAGGCTGGACGGGATTGTATGCACGATGCCGTCGTTGTAGAAAATAGCG‑GCTGGAGGAACGGAGAACCCTTCCACCGTGCCGAGGTGGCCGCCGCCATCCACATAGTCGTCGATg        >  1:679102/1‑150 (MQ=255)                                                                                                                                                 tCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAGGTGGCCGCCGACATCCACATAGTCGTCGATGGCCAGc  <  1:544841/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CCCTGCAGCTCGAGCGGCGACCAGATATTACGGCGCATCAGCGGGTCGTTGCGCAGCTTCTGCCCCACTTCGCGAACCAGCGAGATCGCCTGGTCGATGTTCATGCTGTGCGGGATTGCCACGCGGAAGATCGCGTAGCCGAACTCCCGCGAGTAGTTCTTGATGCTCTTGATTTCGCTGAACGGGATGGTATGCACGATGCCGTCGATGTCGCGCA‑GGCGCACGGTACGAATGGTCAACCCTTCCACCGTGCCGAGGTGGCCGCCGACATCCACATAGTCGTCGATGGCCAGC  >  NC_002947/1928182‑1928475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.