New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2693123 = | 41 (0.780) | 3 (0.060) | 3/236 | NT | 6.5% | coding (178/795 nt) | PP_2361 | chaperone protein |
? | NC_002947 | 2693162 = | 47 (0.930) | coding (217/795 nt) | PP_2361 | chaperone protein |
GCAAGCCTGCCGGCCTGGGCGGCCACTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGACCCGTACCGGCCCTTCACCCGCCGGCCAGGAGCAGGCCTACCGCATCA > NC_002947/2693015‑2693309 | ggtacgggtcaggcggattagttgcttctgcccgggtgcaatgttggcgaccggcgggctgccgataatctcgcgctgcgcctggaactgctcctggtaatcaccctgGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAg > 1:1275515‑M1/109‑150 (MQ=255) aaGCCTGCCGGCCTGGGCGGCCACTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGGCAggg > 2:1078348/1‑150 (MQ=255) aGCCTGCCGGCCTGGGCGGCCACTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGt < 2:500938/150‑1 (MQ=255) aGCCTGCCGGCCTGGGCGGCCACTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGt < 1:1302773/150‑1 (MQ=255) cTGCCGGCCTGGGCGGCCACTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGAt < 2:140290/150‑1 (MQ=255) cTGCCGGCCTGGGCGGCCACTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACNGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGAt < 1:829599/150‑1 (MQ=255) ggCCTGGGCGGCCACTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCa < 2:581303/150‑1 (MQ=255) gCCTGGGCGGCCACTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCat > 2:251512/1‑149 (MQ=255) gCCTGGGCGGCCACTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAg < 1:1221633/150‑1 (MQ=255) cggcCACTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGt > 2:752320/1‑150 (MQ=255) cggcCACTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGt > 2:718300/1‑150 (MQ=255) ttgcttctgcccgggtgcaatgttggcgaccggcgggctgccgataatctcgcgctgcgcctggaactgctcctggtaatcaccctgGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGt > 1:1165362‑M1/88‑132 (MQ=255) ttgcttctgcccgggtgcaatgttggcgaccggcgggctgccgataatctcgcgctgcgcctggaactgctcctggtaatcaccctgGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGt < 2:1165362‑M1/45‑1 (MQ=255) aCTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑ACAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAg > 2:410756/1‑126 (MQ=255) aCTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑ACAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAg < 1:410756/126‑1 (MQ=255) aCTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCCGGAAAACTGGAGCACTGCCCCGTGCTATTCCG‑ATGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAg < 1:1243435/150‑1 (MQ=255) cGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCg < 1:170595/150‑1 (MQ=255) gATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGGTGGAAAACCGCGGCACTGCGCCG‑GCAAACGTGCAGGTGCGGGTGTTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATCATCgg > 2:328132/1‑150 (MQ=255) aCCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGcc > 2:171925/1‑150 (MQ=255) aCCCGGTGCTGCAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTAGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGcc > 2:324408/1‑150 (MQ=255) cccGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGccc > 2:1071502/1‑150 (MQ=255) cGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCccgc < 1:171925/150‑1 (MQ=255) ggTGCTGGAGGCCGACTAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCccgcc < 2:396606/150‑1 (MQ=255) gggCTGGAGTCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATCCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCccgccg > 2:240050/3‑150 (MQ=255) gAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAg < 1:528426/114‑1 (MQ=255) gAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAg > 2:528426/1‑114 (MQ=255) gACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCACCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACAtt > 2:816879/1‑150 (MQ=255) aCCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTg > 2:1043444/1‑150 (MQ=255) gAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATGGGCAGCCCGCCGGTCGCCAACATTGCAcc > 1:427997/1‑150 (MQ=255) aaGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGTGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCTAGATGTTCGGCCGCCCGCCGGTCGCCAACATTGCAccc > 2:311058/1‑150 (MQ=255) tGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGaa < 1:1071502/150‑1 (MQ=255) gCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCACGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGacg > 1:1260595/1‑148 (MQ=255) aCCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATCCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGa < 1:240050/150‑1 (MQ=255) accctggcgccaggcgaatacccgcacctgcaggtttgccggcgcCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCaa < 2:1165362‑M2/87‑1 (MQ=255) accctggcgccaggcgaatacccgcacctgcaggtttgccggcgcCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCaa > 1:1165362‑M2/46‑132 (MQ=255) aCTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGACCCGTAcc < 1:157257/150‑1 (MQ=255) ctggcgccaggcgaatacccgcacctgcaggtttgccggcgcCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTAATCCGCCTGACCCGTAcc > 1:1275515‑M2/43‑150 (MQ=255) tGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCgg < 1:195570/87‑1 (MQ=255) tGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCgg > 2:195570/1‑87 (MQ=255) GCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGAAGTTTAAGTGGCAGGGCGAGCTGAGCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGACCCGTACCGGc > 2:404772‑M1/1‑150 (MQ=255) gcCG‑GCAAACCTTCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTAAGAGGAGCGTGAAAAGTATTTTTTCTATAGTATCGGCAGCCTGCCGGTCGCCAACATTGCTCCCGGGCAGAAGCAACTGATCCGCCTGACCCGTACCGGccc < 1:324408/150‑1 (MQ=255) CCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGACCCGTACCGGCCCt > 1:311058‑M1/1‑150 (MQ=255) g‑gCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCgg > 1:1100035/1‑111 (MQ=255) g‑gCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCgg < 2:1100035/111‑1 (MQ=255) gCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAATATTGCACCCGGGCAGAAGCAACTGATCCGCCt > 2:1354619/1‑131 (MQ=255) gCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCt < 1:1354619/131‑1 (MQ=255) aaaCCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGACCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGACCCGTACCGGCCCTTCAcc > 2:1045765/1‑150 (MQ=255) aCCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCgg > 1:660255/1‑76 (MQ=255) aCCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCgg < 2:660255/76‑1 (MQ=255) cTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGAc > 2:94400/1‑128 (MQ=255) cTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGAc < 1:94400/128‑1 (MQ=255) cTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGACCCGTACCGGCCCTTCACccgcc > 2:915991/1‑150 (MQ=255) gTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATc < 2:863101/66‑1 (MQ=255) gTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATc > 1:863101/1‑66 (MQ=255) gggTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGACCCGTACCGGCCCTTCACCCGCCGGCCAGGAGc > 1:399641/1‑150 (MQ=255) ggTATTCGCCTGGCACCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGACCCGTACCGGCCCTTCACCCGCCGGCCAGGAGCa < 1:816879/150‑1 (MQ=255) ttCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAg < 1:186364/96‑1 (MQ=255) ttCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAg > 2:186364/1‑96 (MQ=255) ttgccggcgcCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTAATCCGCCTGACCCGTACCGGCCCTTCACCCGCCGGCCAGGAGCAGGCCTa < 2:1275515‑M2/140‑1 (MQ=255) tGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGACCCGTACCGGCCCTTCACCCGCCGGCCAGGAGCAGGCCTACCGc > 2:283998/1‑150 (MQ=255) gcCAGGGTGATTCCCAGGAGGCGGTCCAGCCGCCGCGCGGGATTATCGGCGGCCCGCCGCTCGCCAACATGGCAGCCGTGCAGAAGCGACTGATCTGCCGGAGGCGTACCAGCCCTTCACCCGCCGGCCAGGAGCAGGCCGCCCgcagca < 2:427997/150‑1 (MQ=255) | GCAAGCCTGCCGGCCTGGGCGGCCACTTCGGTGCTGATCTGGCCGATCGACCCGGTGCTGGAGGCCGACCAGAAGGCAGGTGCGTTGTGGCTGGAAAACCGCGGCACTGCGCCG‑GCAAACCTGCAGGTGCGGGTATTCGCCTGGCGCCAGGGTGATTACCAGGAGCAGTTCCAGGCGCAGCGCGAGATTATCGGCAGCCCGCCGGTCGCCAACATTGCACCCGGGCAGAAGCAACTGATCCGCCTGACCCGTACCGGCCCTTCACCCGCCGGCCAGGAGCAGGCCTACCGCATCA > NC_002947/2693015‑2693309 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |