New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3767801 =	49 (0.930)	5 (0.100)	5/238	NT	10.0%	coding (1191/1290 nt)	PP_3329	membrane protein
	?	NC_002947	3767830 =	43 (0.850)					coding (1220/1290 nt)	PP_3329	membrane protein

TTTGCGCCGATCAGCCGGGACGGCGCGGCTTTGCACGAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAATATTCGTGCTTGAAAAATCACCCTGTTCAGATGCATCAGAAGATGTAGAATC  >  NC_002947/3767682‑3767978                                                                                                                                                      |                                                                                                                                                     tttGCGCCGATCAGCCGGGACGGCGCGGCTTTGCACGAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGt                                                                                                                                                     <  1:1185070/150‑1 (MQ=255)       ctgttCAGCCGGGACGGCGCGGCTTTGCACGAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCtt                                                                                                                                               <  1:360030/146‑1 (MQ=255)             aagcacgaatattcaatcgggtacaggcgcacgagacttattgaacaccgatgagttcggcagcgagcgcgcggagttcgtccttgtcctgttgaagtacaagcccactgccgcgcgcttgcttgcacacgcgggcaGTGGGCTTGTa                                                                                                                                            >  2:1370090‑M2/138‑148 (MQ=255)             aagcacgaatattcaatcgggtacaggcgcacgagacttattgaacaccgatgagttcggcagcgagcgcgcggagttcgtccttgtcctgttgaagtacaagcccactgccgcgcgcttgcttgcacacgcgggcaGTGGGCTTGTa                                                                                                                                            <  1:1370090‑M2/11‑1 (MQ=255)                 gggACGGCGCGGCTTTGCACGAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAAc                                                                                                                                     <  2:102550/150‑1 (MQ=255)                  gaatattcaatcgggtacaggcgcaagcgccttattgaccacctactatttcggcagcgagcgcgcggagttcgtccttgtcctgttgaagtacaagcccacTGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACa                                                                                                                                    >  2:944893‑M1/103‑150 (MQ=255)                    aCGGCGCGGCTTTGCACGAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGTGCTTGTACTTCAACAgg                                                                                                                                  <  2:730352/150‑1 (MQ=255)                     cGGCGCGGCTTTGCACGAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGa                                                                                                                                 <  1:786334/150‑1 (MQ=255)                     cGGCGCGGCTTTGCACGAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGa                                                                                                                                 <  1:1330786/150‑1 (MQ=255)                      ggCGCGGCTTTGCACGAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGAc                                                                                                                                >  1:268983/1‑150 (MQ=255)                            gCTTTGCACGAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGAc                                                                                                                          <  2:931184/150‑1 (MQ=255)                                  cACGAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTc                                                                                                                    >  1:934333/1‑150 (MQ=255)                                   aCGAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTTGGCGCGTACTTCAACAGTACAAGGACGAACTcc                                                                                                                   >  2:87066/1‑150 (MQ=255)                                     gAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCcgc                                                                                                                 >  1:1029639/1‑150 (MQ=255)                                     gAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCcgc                                                                                                                 <  2:1029639/150‑1 (MQ=255)                                     gAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCcgc                                                                                                                 <  2:926570/150‑1 (MQ=255)                                     gAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCcgc                                                                                                                 <  2:934333/150‑1 (MQ=255)                                            aTCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGcgctcg                                                                                                          >  2:1345773/1‑150 (MQ=255)                                             tCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGcgctcgc                                                                                                         >  1:1227116/1‑150 (MQ=255)                                               tGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTg                                                                                                       >  1:492870/1‑150 (MQ=255)                                                    ttgaacaccgatgagttcggcagcgagcgcgcggagttcgtccttgtcctgttgaagtacaagcccacTGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGc                                                                                                                                                 >  1:499226‑M1/69‑103 (MQ=255)                                                    ttgaacaccgatgagttcggcagcgagcgcgcggagttcgtccttgtcctgttgaagtacaagcccacTGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGc                                                                                                                                                 <  2:499226‑M1/35‑1 (MQ=255)                                                    ttGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGaa                                                                                                  >  2:894638/1‑150 (MQ=255)                                                      gATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACt                                                                                                <  1:1312681/150‑1 (MQ=255)                                                        tCAAAGCCCTGGTCAGCCTGGCGCGCGTTGATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCa                                                                                              >  1:1261386/1‑150 (MQ=255)                                                         cAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCAt                                                                                             >  2:685737/1‑150 (MQ=255)                                                         cAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCAt                                                                                             <  1:1104715/150‑1 (MQ=255)                                                           aaGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCg                                                                                           <  2:1160208/150‑1 (MQ=255)                                                           aaGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACACGCGTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCg                                                                                           <  1:87066/150‑1 (MQ=255)                                                               ccTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGgtgt                                                                                       <  1:613871/150‑1 (MQ=255)                                                                          tGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGtct                                                                            >  1:650609/1‑150 (MQ=255)                                                                            gcgcgcATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTTTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCg                                                                          <  1:1168274/150‑1 (MQ=255)                                                                            gcgcgcATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACaa                                                                                                                              <  2:960164/98‑1 (MQ=255)                                                                            gcgcgcATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACaa                                                                                                                              >  1:960164/1‑98 (MQ=255)                                                                                 cATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTgcgc                                                                     <  1:685737/150‑1 (MQ=255)                                                                                  aTCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGc                                                                                                                                                 <  1:1001317/73‑1 (MQ=255)                                                                                  aTCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGc                                                                                                                                                 >  2:1001317/1‑73 (MQ=255)                                                                                        ccccGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTAcc                                                              <  2:1227116/150‑1 (MQ=255)                                                                                          ccGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGCGTTCAATAAGTCTCGTGCGCCTGTACCCg                                                            >  2:1360557/1‑150 (MQ=255)                                                                                           cgcgCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGa                                                           >  2:1308281/1‑150 (MQ=255)                                                                                                 tttCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAat                                                     >  1:815649/1‑150 (MQ=255)                                                                                                     aaCCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGCGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAATATTc                                                 <  1:1360557/150‑1 (MQ=255)                                                                                                     aaCCCGCATGACGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAATATTc                                                 >  2:1059792/1‑150 (MQ=255)                                                                                                      tgttgaagtacaagcccactgcccgcgtgtgcaagcaagcgcgcggcaGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAAATAGTAGGTGGTCAATAAGGCGCTTGCGCCTGTACCCGATTGAATATTc                                                 >  2:944893‑M2/49‑150 (MQ=255)                                                                                                             tacaagcccacTGCC‑CGCGTGTGCAAGCAAGCGCGCGGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAATATTCGTGCtt                                           >  2:1370090‑M1/12‑148 (MQ=255)                                                                                                             tacaagcccacTGCC‑CGCGTGTGCAAGCAAGCGCGCGGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAATATTCGTGCtt                                           <  1:1370090‑M1/137‑1 (MQ=255)                                                                                                                   gcccactgcccgcgtgtgcaagcaagcgcgcggcaGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCaa                                                                                   <  2:499226‑M2/68‑1 (MQ=255)                                                                                                                   gcccactgcccgcgtgtgcaagcaagcgcgcggcaGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCaa                                                                                   >  1:499226‑M2/36‑103 (MQ=255)                                                                                                                     gCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGaa                                                                                                                       <  2:140829/64‑1 (MQ=255)                                                                                                                     gCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGaa                                                                                                                       >  1:140829/1‑64 (MQ=255)                                                                                                                     gCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAATATTCGTGCTTGAAAAATCAc                                 <  2:815649/150‑1 (MQ=255)                                                                                                                        TGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAATATTCGTGCTTGAAAAATCACCCt                              <  2:1310882‑M1/150‑1 (MQ=255)                                                                                                                                gcttgcttGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAATATTCGTGCTTGAAAAATCACCCTGTTCAGAt                      <  2:268983/150‑1 (MQ=255)                                                                                                                                gcttgcttGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAATATTCGTGCTTGAAAAATCACCCTGTTCAGAt                      <  2:650609/150‑1 (MQ=255)                                                                                                                                   tgcttgcACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAATATTCGTGCTTGAAAAATCACCCTGTTCAGATGCa                   <  1:1059792/150‑1 (MQ=255)                                                                                                                                                     aGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAATATTCGTGCTTGAAAAATCACCCTGTTCAGATGCATCAGAAGATGTAGAATc  >  1:333410‑M2/2‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                     TTTGCGCCGATCAGCCGGGACGGCGCGGCTTTGCACGAGGTCAATCTGCGCTTGATCAAAGCCCTGGTCAGCCTGGCGCGCATCAATCCCCGCGCATTTCAACCCGCCTGCAGCCGGCATGCCGCGCGCTTGCTTGCACACGCG‑GGCAGTGGGCTTGTACTTCAACAGGACAAGGACGAACTCCGCGCGCTCGCTGCCGAACTCATCGGTGTTCAATAAGTCTCGTGCGCCTGTACCCGATTGAATATTCGTGCTTGAAAAATCACCCTGTTCAGATGCATCAGAAGATGTAGAATC  >  NC_002947/3767682‑3767978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.