New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3796538	49 (0.930)	6 (0.120)	6/228	NT	11.2%	intergenic (‑42/+50)	fcs/vdh	feruloyl‑CoA‑synthetase/vanillin dehydrogenase
	?	NC_002947	= 3796547	50 (1.030)					intergenic (‑51/+41)	fcs/vdh	feruloyl‑CoA‑synthetase/vanillin dehydrogenase

CGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCGAAGCTGCCATAGCCGCTGGAC  >  NC_002947/3796400‑3796690                                                                                                                                                    |                                                                                                                                                cGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGgg                                                                                                                                               >  1:150558‑M2/1‑148 (MQ=255)  gTGACTGACCTGCAGCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGggg                                                                                                                                              <  2:353034‑M2/150‑4 (MQ=255)            tGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCAt                                                                                                                                    >  2:789567/1‑150 (MQ=255)                  tGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGcc                                                                                                                              <  2:203618/150‑1 (MQ=255)                     ggATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGa                                                                                                                           <  1:1382055/150‑1 (MQ=255)                      gATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAg                                                                                                                          <  1:900428/150‑1 (MQ=255)                           ccGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGACTTCGTTATTCACGCTGGTTGCTCCTTGTTCTTGCTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTg                                                                                                                     >  2:595100/1‑150 (MQ=255)                            cGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTgg                                                                                                                    >  2:788818/1‑150 (MQ=255)                                ggCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGCGCGGCGGTCATCTTGCCGGAGGTCTGGGCCt                                                                                                                <  2:875860/150‑1 (MQ=255)                                 gCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTTTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTg                                                                                                               >  1:241340/1‑150 (MQ=255)                                  ccACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGc                                                                                                              >  2:1218472/1‑150 (MQ=255)                                       tGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCgg                                                                                                         <  2:481247/150‑1 (MQ=255)                                          cGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTa                                                                                                      <  1:788818/150‑1 (MQ=255)                                                       gTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCTCGGCTAGATGGGATAGTGa                                                                                         >  1:477448/1‑150 (MQ=255)                                                          ggCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGAcgc                                                                                      <  1:194889/150‑1 (MQ=255)                                                           gCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGAcgcg                                                                                     <  1:362062/150‑1 (MQ=255)                                                            ccAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCgg                                                                                    >  2:807208/1‑150 (MQ=255)                                                                 gtcggtcgACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGt                                                                               <  1:1218472/150‑1 (MQ=255)                                                                  tcggtcgACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTg                                                                              <  1:789567/150‑1 (MQ=255)                                                                    ggtcgACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCt                                                                            >  2:317491/1‑150 (MQ=255)                                                                     gtcgACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTg                                                                           <  2:930010/150‑1 (MQ=255)                                                                       cgACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCTCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGa                                                                         <  2:477448/150‑1 (MQ=255)                                                                         aCCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAgg                                                                       <  2:788753/150‑1 (MQ=255)                                                                           ccTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTg                                                                              >  2:1165423/1‑141 (MQ=255)                                                                           ccTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTg                                                                              <  1:1165423/141‑1 (MQ=255)                                                                                      ttCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGa                                                                         <  2:368952/135‑1 (MQ=255)                                                                                      ttCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGa                                                                         >  1:368952/1‑135 (MQ=255)                                                                                           tATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTgg                                                     <  2:1038036/150‑1 (MQ=255)                                                                                                aCGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATgg                                                                                                 >  2:161327/1‑101 (MQ=255)                                                                                                aCGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATgg                                                                                                 <  1:161327/101‑1 (MQ=255)                                                                                                  gCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACt                                              >  2:118907/1‑150 (MQ=255)                                                                                                         gCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATCTGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGAt                                       <  1:512376/150‑1 (MQ=255)                                                                                                           tCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATgg                                                                                                 >  1:731403/1‑90 (MQ=255)                                                                                                           tCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATgg                                                                                                 <  2:731403/90‑1 (MQ=255)                                                                                                           tCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAg                                                                        >  2:450117/1‑115 (MQ=255)                                                                                                           tCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAg                                                                        <  1:450117/115‑1 (MQ=255)                                                                                                           tCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATgg                                     >  1:134198/1‑150 (MQ=255)                                                                                                           tCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATgg                                     >  1:134225/1‑150 (MQ=255)                                                                                                             cttgttcttgttGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAAc                                               <  1:685927/138‑1 (MQ=255)                                                                                                             cttgttcttgttGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAAc                                               >  2:685927/1‑138 (MQ=255)                                                                                                                gttcttgttGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAg                                                                                            <  2:869211/90‑1 (MQ=255)                                                                                                                gttcttgttGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAg                                                                                            >  1:869211/1‑90 (MQ=255)                                                                                                                       ttgtACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGt                                                                                           >  1:1269287/1‑84 (MQ=255)                                                                                                                       ttgtACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGt                                                                                           <  2:1269287/84‑1 (MQ=255)                                                                                                                         gtACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCg                       >  1:22188/1‑150 (MQ=255)                                                                                                                         gtACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCg                       >  1:408018/1‑150 (MQ=255)                                                                                                                             aTCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCGAAGc                   >  1:991526/1‑150 (MQ=255)                                                                                                                              tCCTGCCGCCGCCCGATATGACGgggcggcggtaggatgtacaacaagaacaaggagcaacctgcgtgaataacgaagcccgctcagggtcgaccgaccctggc                                                                <  2:142106‑M2/104‑82 (MQ=255)                                                                                                                              tCCTGCCGCCGCCCGATATGACGgggcggcggtaggatgtacaacaagaacaaggagcaacctgcgtgaataacgaagcccgctcagggtcgaccgaccctggc                                                                >  1:142106‑M2/1‑23 (MQ=255)                                                                                                                                 tGCCGCCGCCCGATATGACGgggcggcggcaggatgtacaacaagaacaaggagcaacctgcgtgaataacgaagcccgctcagg                                                                                <  2:226887‑M2/85‑66 (MQ=255)                                                                                                                                 tGCCGCCGCCCGATATGACGgggcggcggcaggatgtacaacaagaacaaggagcaacctgcgtgaataacgaagcccgctcagg                                                                                >  1:226887‑M2/1‑20 (MQ=255)                                                                                                                                 tGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTgg                                                     >  2:350397/1‑112 (MQ=255)                                                                                                                                 tGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTgg                                                     <  1:350397/112‑1 (MQ=255)                                                                                                                                  gccgccgccCGATATGACGgggcggcggcaggatgtacaacaagaacaaggagcaacctgcgtgaataacgaagc                                                                                         <  2:579795‑M2/75‑57 (MQ=255)                                                                                                                                  gccgccgccCGATATGACGgggcggcggcaggatgtacaacaagaacaaggagcaacctgcgtgaataacgaagc                                                                                         >  1:579795‑M2/1‑19 (MQ=255)                                                                                                                                           cGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCGAAGCTGCCATAGCCGCTg     <  1:595100/150‑1 (MQ=255)                                                                                                                                           cGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCGAAGCTGCCATAGCCGCTg     <  1:118907/150‑1 (MQ=255)                                                                                                                                              tatGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCGAAGCTGCCATAGCCGCTGGAc  <  2:408018/150‑1 (MQ=255)                                                                                                                                              tatGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCGAAGCTGCCATAGCCGCTGGAc  <  2:22188/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                CGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGGCTTCGTTATTCACGCAGGTTGCTCCTTGTTCTTGTTGTACATCCTGCCGCCGCCCGATATGACGGGGCGGCGGTCATCTTGCCGGAGGTCTGGGCCTGCCGCGGCTAGATGGGATAGTGACGCGGGCCGTGCTGGAGGGTGACCCAGCGCAACTGGGTGAACTGATCGATGGCCGTGCGGCTGCCGAAGCTGCCATAGCCGCTGGAC  >  NC_002947/3796400‑3796690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.