New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3811617 =	44 (0.840)	4 (0.090)	4/220	NT	9.7%	intergenic (‑165/‑103)	PP_3367/PP_3368	hypothetical protein/MFS transporter
	?	NC_002947	3811664 =	35 (0.750)					intergenic (‑212/‑56)	PP_3367/PP_3368	hypothetical protein/MFS transporter

GTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCTTTGCCATC  >  NC_002947/3811516‑3811806                                                                                                                                                     |                                                                                                                                               gTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCAt                                                                                                                                               <  1:288832/150‑1 (MQ=255)    aCCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGa                                                                                                                                            >  1:1057768/1‑150 (MQ=255)    aCCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGa                                                                                                                                            >  1:346836/1‑150 (MQ=255)        tttttactggggagcggggggtgttcctggactgacatctgtatccctattgaaacatgctgaaacgttcaaggcgggataatagtcaatcgatggctgcaacgtcgcggaagccggggcagcatcctcgacgttgcagccATCGATTGa                                                                                                                                        <  2:1351158‑M2/9‑1 (MQ=255)        tttttactggggagcggggggtgttcctggactgacatctgtatccctattgaaacatgctgaaacgttcaaggcgggataatagtcaatcgatggctgcaacgtcgcggaagccggggcagcatcctcgacgttgcagccATCGATTGa                                                                                                                                        >  1:1351158‑M2/142‑150 (MQ=255)        cccgcAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGa                                                                                                                                        >  1:225138/1‑150 (MQ=255)           gcAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACta                                                                                                                                     >  1:81356/1‑150 (MQ=255)             aGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACtatt                                                                                                                                   <  2:81356/150‑1 (MQ=255)                cTAAAAGAGCAGGCGTACCCGCTGCCACAGGCTCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGCCACGGGCTGCAACGCCGCGGAAGCAGGGGCAGCATCCTCGAAGTTGCAGCCATCGATTGACtattacc                                                                                                                                >  2:111420/1‑148 (MQ=255)                  aaaaGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATccc                                                                                                                              >  2:1007346/1‑150 (MQ=255)                   aaaGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCg                                                                                                                             <  2:458209/150‑1 (MQ=255)                           ggCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGACCAGGACACCGGCTGCAACGTCGCGCAAGCCGGGCCAGCACCCTCGACGTTGCAGCTATCGATTGACTTGTATCCCGCCTTCAAc                                                                                                                     <  2:365044/150‑1 (MQ=255)                              gTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGtt                                                                                                                  >  1:1363353/1‑150 (MQ=255)                                 cccGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCa                                                                                                               <  2:418972/150‑1 (MQ=255)                                 cccGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCa                                                                                                               <  1:822474/150‑1 (MQ=255)                                          acaGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTc                                                                                                      >  1:1040164/1‑150 (MQ=255)                                                tCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAgg                                                                                                <  2:690647/150‑1 (MQ=255)                                                     tCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCAt                                                                                                           <  2:570924/134‑1 (MQ=255)                                                     tCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCAt                                                                                                           >  1:570924/1‑134 (MQ=255)                                                         ttCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGCAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGAt                                                                                       <  2:72460/150‑1 (MQ=255)                                                         ttCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGAt                                                                                       <  1:1411759/150‑1 (MQ=255)                                                            aGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTc                                                                                    >  2:1251967/1‑150 (MQ=255)                                                             gCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCCGCATTTTCTACTTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCa                                                                                   <  1:530156/150‑1 (MQ=255)                                                             gCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGAc                                                                                                                                       >  2:1049357/1‑98 (MQ=255)                                                             gCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGAc                                                                                                                                       <  1:1049357/98‑1 (MQ=255)                                                                aGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGAtt                                                                                                                                          >  2:996349/1‑92 (MQ=255)                                                                aGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGAtt                                                                                                                                          <  1:996349/92‑1 (MQ=255)                                                                  gggCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAgg                                                                                                >  2:22446/1‑132 (MQ=255)                                                                  gggCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAgg                                                                                                <  1:22446/132‑1 (MQ=255)                                                                  gggCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCa                                                                              <  2:1363353/150‑1 (MQ=255)                                                                  gggCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCa                                                                              <  2:39150/150‑1 (MQ=255)                                                                   ggCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAg                                                                             <  1:591370/150‑1 (MQ=255)                                                                                             tcaatcgatGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTaaaaa                                                   <  2:1351158‑M1/141‑1 (MQ=255)                                                                                             tcaatcgatGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTaaaaa                                                   >  1:1351158‑M1/10‑150 (MQ=255)                                                                                               ggACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAaca                                                 >  1:862661/1‑150 (MQ=255)                                                                                                   acGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGAt                                                                                       >  1:437001/1‑108 (MQ=255)                                                                                                   acGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGAt                                                                                       <  2:437001/108‑1 (MQ=255)                                                                                                      GGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCAATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGc                                          >  2:757229‑M1/1‑150 (MQ=255)                                                                                                         TGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGACGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCaa                                       <  2:953465‑M1/150‑1 (MQ=255)                                                                                                         TGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGACGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCaa                                       <  2:953561‑M1/150‑1 (MQ=255)                                                                                                                tcgaggatgctgccccggcttccgcgacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGAt                                                                                       >  1:1132678‑M2/38‑95 (MQ=255)                                                                                                                tcgaggatgctgccccggcttccgcgacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGAt                                                                                       <  2:1132678‑M2/58‑1 (MQ=255)                                                                                                                TCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGaa                                >  2:1040164‑M1/1‑150 (MQ=255)                                                                                                                   cgGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAgcc                             <  1:1007346/150‑1 (MQ=255)                                                                                                                     gAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAgccgc                           >  2:1365287/1‑150 (MQ=255)                                                                                                                              gcagcaTCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACt                  <  2:225138/150‑1 (MQ=255)                                                                                                                                agcaTCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTgg                <  2:346836/150‑1 (MQ=255)                                                                                                                                 gcaTCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTggg               >  1:850237/1‑150 (MQ=255)                                                                                                                                    tCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAg            >  2:1419611/1‑150 (MQ=255)                                                                                                                                      cTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCt          >  1:1030550/1‑150 (MQ=255)                                                                                                                                        cgacgttgcaggcATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACGGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCttt        <  1:793872‑M2/137‑1 (MQ=255)                                                                                                                                        cgacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCttt        <  1:1365287‑M2/137‑1 (MQ=255)                                                                                                                                         gacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCaa                                                                                                    <  2:372714‑M2/45‑1 (MQ=255)                                                                                                                                         gacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCaa                                                                                                    >  1:372714‑M2/13‑57 (MQ=255)                                                                                                                                              tgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCTTTGCCATc  <  2:1057768‑M2/143‑1 (MQ=255)                                                                                                                                                   ccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGAt                                                                                       <  1:906853‑M2/58‑1 (MQ=255)                                                                                                                                                   ccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGAt                                                                                       >  2:906853‑M2/3‑60 (MQ=255)                                                                                                                                                     |                                                                                                                                               GTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCTTTGCCATC  >  NC_002947/3811516‑3811806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.