New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4268676	46 (0.880)	3 (0.060)	3/234	NT	7.1%	coding (669/1341 nt)	PP_3740	MFS transporter
	?	NC_002947	= 4268725	35 (0.700)					coding (620/1341 nt)	PP_3740	MFS transporter

TGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACCGATCGCCAGCCCCAATGCCCCAGCAGCCATACCGCCAG  >  NC_002947/4268582‑4268858                                                                                                                                                |                                                                                                                                       tggtgCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccggc                                                                                                                                  >  2:1051785‑M2/1‑144 (MQ=255)      cggcgCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGcc                                                                                                                             <  1:106456/150‑1 (MQ=255)               gCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAg                                                                                                                    <  2:1078026/150‑1 (MQ=255)                        agcagcTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGAc                                                                                                          >  1:1396140/1‑150 (MQ=255)                                ccTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCaa                                                                                                  <  2:265822/150‑1 (MQ=255)                                      cccGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCAcag                                                                                            >  1:1392132/1‑150 (MQ=255)                                        cGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGACCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCAcagca                                                                                          <  1:1297611/150‑1 (MQ=255)                                                  aCCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCgg                                                                                >  2:1038013/1‑150 (MQ=255)                                                     ctctGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGAt                                                                             <  2:1396140/150‑1 (MQ=255)                                                      tctGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGcc                                                                                                                             >  2:266495/1‑102 (MQ=255)                                                      tctGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGcc                                                                                                                             <  1:266495/102‑1 (MQ=255)                                                      tctGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATc                                                                            <  1:1038013/150‑1 (MQ=255)                                                        tGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCAc                                                                          <  2:1392132/150‑1 (MQ=255)                                                            cTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGt                                                                      >  2:1219327/1‑150 (MQ=255)                                                             ttGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTa                                                                     >  2:69468/1‑150 (MQ=255)                                                                    aaCAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTgac                                                              >  2:281880/1‑150 (MQ=255)                                                                         ccGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑CGGCCGTTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGAcgc                                                         >  1:1021491/1‑150 (MQ=255)                                                                           ggTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGAcgccg                                                       >  1:165970/1‑150 (MQ=255)                                                                            gTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGAcgccgc                                                      >  1:553066/1‑150 (MQ=255)                                                                             tAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCACCCCGTTCTGG‑AAGCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACgccgcc                                                     >  2:38012/1‑150 (MQ=255)                                                                             tAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACgccgcc                                                     <  2:553066/150‑1 (MQ=255)                                                                                 tGCGCCAATGCCGGCTGGCCAAGGCTCAAGGACAGGCAGTAGCCGCGGGCCAGAGCACTGGCCGCCTGGAGTGCCAGCAGAAAGGCCA‑CCGACTCTGGCAACCACAGCAGTAACAGCGGGCTCCCCAGTCCGGTGACGACGCCGCCAAAc                                                 <  2:433899/150‑1 (MQ=255)                                                                                  gcgcCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACa                                                >  1:1077990/1‑150 (MQ=255)                                                                                      cAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgctggcgccggccatgcgccgc                                             <  1:1067805‑M2/150‑92 (MQ=255)                                                                                         tGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATAc                                         <  1:69468/150‑1 (MQ=255)                                                                                                   ccAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgctggcgccggccatgcgccgcaccacgctggtga                                <  2:1092897‑M2/150‑105 (MQ=255)                                                                                                    cAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgctggcgccggccatgcgccgcaccacgctggtgat                               <  1:283922‑M2/150‑106 (MQ=255)                                                                                                     aaGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACCGATCGCCAGcc                             <  1:1219327/150‑1 (MQ=255)                                                                                                              ggCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGActc                                                                                                        >  1:1310067/1‑66 (MQ=255)                                                                                                              ggCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGActc                                                                                                        <  2:1310067/66‑1 (MQ=255)                                                                                                              ggCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACCGATCGCCAGCCCCAATGccc                    >  2:18792/1‑150 (MQ=255)                                                                                                                 cAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTa                                                                     >  2:520050/1‑98 (MQ=255)                                                                                                                 cAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTa                                                                     <  1:520050/98‑1 (MQ=255)                                                                                                                       gTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACCGATCGCCAGCCCCAATGCCCCAGCAGCCa           >  2:1210505/1‑150 (MQ=255)                                                                                                                            cccGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACCGATCGCCAGCCCCAAt                        <  2:1114126/132‑1 (MQ=255)                                                                                                                            cccGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACCGATCGCCAGCCCCAAt                        >  1:1114126/1‑132 (MQ=255)                                                                                                                             ccGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACCGATCGCCAGCCCCAATGCCCCAGCAGCCATACCGc     >  1:647283/1‑150 (MQ=255)                                                                                                                                ggCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACCGATCGCCAGCCCCAATGCCCCAGCAGCCATACCGCCAg  <  2:647283/150‑1 (MQ=255)                                                                                                                                   cAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGt                                                                                        <  2:1154300/61‑1 (MQ=255)                                                                                                                                   cAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGt                                                                                        >  1:1154300/1‑61 (MQ=255)                                                                                                                                     gagCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACa                                                <  2:1402736/99‑1 (MQ=255)                                                                                                                                     gagCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACa                                                >  1:1402736/1‑99 (MQ=255)                                                                                                                                                |                                                                                                                                       TGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCA‑GCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACCGATCGCCAGCCCCAATGCCCCAGCAGCCATACCGCCAG  >  NC_002947/4268582‑4268858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.