New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4419554	44 (0.840)	4 (0.080)	4/236	NT	9.3%	coding (277/552 nt)	PP_3910	hypothetical protein
	?	NC_002947	= 4419573	36 (0.710)					coding (296/552 nt)	PP_3910	hypothetical protein

TACGTCGGCGGTATCAAGCTCAGCGCCAGCCGCGACCTGGACGTGCACTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAA  >  NC_002947/4419428‑4419720                                                                                                                                                  |                                                                                                                                                    tACGTCGGCGGTATCAAGCTCAGCGCCAGCCGCGACCTGGACGTGCAATGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAgcac                                                                                                                                                 >  1:667586‑M2/1‑146 (MQ=255)     tCGGCGGTATCAAGCTCAGCGCCAGCCGCGACCTGGACGTGCACTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAgc                                                                                                                                             <  1:487974/150‑1 (MQ=255)         cggTATCAAGCTCAGCGCCAGCCGCGACCTGGACGTGCACTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAgcacctctttgt                                                                                                                                         >  2:208865‑M2/1‑138 (MQ=255)             aTCAAGCTCAGCGCCAGCCGCGACCTGGACGTGCACTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGgac                                                                                                                                     <  1:1053999/150‑1 (MQ=255)             aTCAAGCTCAGCGCCAGCCGCGACCTGGACGTGCACTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGgac                                                                                                                                     <  1:560468/150‑1 (MQ=255)                              ccGCGACCTGGACGTGCACTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGcaca                                                                                                                    <  2:1233753/150‑1 (MQ=255)                                gcgACCTGGACGTGCACTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACt                                                                                                                  >  1:587925/1‑150 (MQ=255)                                    ccTGGACGTGCACTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGccc                                                                                                              <  1:426536/150‑1 (MQ=255)                                       ggACGTGCACTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGa                                                                                                           >  2:1023818/1‑150 (MQ=255)                                       ggACGTGCACTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGa                                                                                                           >  2:1376125/1‑150 (MQ=255)                                              cACTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTTTGGAAAGCACACTGCCCGGACGCTATc                                                                                                    <  2:676004/150‑1 (MQ=255)                                               aCTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCg                                                                                                   >  2:1206937/1‑150 (MQ=255)                                                       cGGCCTGACGAATACGGCTACAGCTCGCTGCGCTGGGCGGCCAAGCATGCCAAGGGAACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACGAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGTCGATAGCGTCCgggca                                                                                           <  2:107069/150‑3 (MQ=255)                                                            tGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAAt                                                                                      >  2:382465/1‑150 (MQ=255)                                                              aCGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAAtgt                                                                                    <  1:529576/150‑1 (MQ=255)                                                                gAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGCTTACACACTGCCCGGACGCTATCGACCGGGACGAAATGTgg                                                                                  >  1:727547/1‑150 (MQ=255)                                                                  aTACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGa                                                                                <  2:428173/150‑1 (MQ=255)                                                                            cgctcgctGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGc                                                                      >  2:275494/1‑150 (MQ=255)                                                                             gctcgctGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCg                                                                     >  1:1265840/1‑150 (MQ=255)                                                                                        cGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGGGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTggc                                                          <  1:421704/150‑1 (MQ=255)                                                                                                 aaGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGACGGCTGAGCACCAGCGCCTGGACGACCTCTGCAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTgg                                                 <  1:95244/150‑1 (MQ=255)                                                                                                 aaGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGTTAAGCACACTGCCCGGACGCTAGCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTgg                                                 <  1:95220/150‑1 (MQ=255)                                                                                                 aaGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTgg                                                 >  1:92760/1‑150 (MQ=255)                                                                                                   gCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCt                                               >  1:1348058/1‑150 (MQ=255)                                                                                                      tGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAg                                            >  1:277078/1‑150 (MQ=255)                                                                                                         cAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAgcacccctttgtctgtgcccttggcatgcttggccgcccggcgcagcgagcggtagccgcattcgtcaggccggcaccagtgcacgtccaggtcgcggctggcgctga                                         <  1:1302635‑M2/150‑109 (MQ=255)                                                                                                         cAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTgg                                         <  2:1265840/150‑1 (MQ=255)                                                                                                           aGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCg                                       >  1:806783/1‑150 (MQ=255)                                                                                                              gCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTa                                    >  2:298097/1‑150 (MQ=255)                                                                                                               cacaGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTAt                                   <  1:1206937/150‑1 (MQ=255)                                                                                                                      aaaGAGGTGCGGGCAGCCGAGAAGGCTGAgcacctctttgtctgtgcccttggcatgcttggccgcccggcgcagcgagcggtagccgtattcgtcaggccggcaccagtgcacgtc                                                             <  1:1000099‑M2/117‑89 (MQ=255)                                                                                                                      aaaGAGGTGCGGGCAGCCGAGAAGGCTGAgcacctctttgtctgtgcccttggcatgcttggccgcccggcgcagcgagcggtagccgtattcgtcaggccggcaccagtgcacgtc                                                             >  2:1000099‑M2/1‑29 (MQ=255)                                                                                                                      aaaGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATc                                                    <  1:464641/126‑1 (MQ=255)                                                                                                                      aaaGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATc                                                    >  2:464641/1‑126 (MQ=255)                                                                                                                      aaaGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTc                            <  1:511287/150‑1 (MQ=255)                                                                                                                      aaaGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTc                            <  1:695093/150‑1 (MQ=255)                                                                                                                        agagGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAg                          >  2:260223/1‑150 (MQ=255)                                                                                                                            gTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCAc                      >  2:1284501/1‑150 (MQ=255)                                                                                                                                  gCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGCCGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGAt                >  2:48718/1‑150 (MQ=255)                                                                                                                                    aGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATAc              >  2:990173/1‑150 (MQ=255)                                                                                                                                        gagaAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGta          >  1:260293/1‑150 (MQ=255)                                                                                                                                           aaGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATAc       <  2:1348058/150‑1 (MQ=255)                                                                                                                                              gCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTg                                                            <  1:959353/94‑1 (MQ=255)                                                                                                                                              gCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTg                                                            >  2:959353/1‑94 (MQ=255)                                                                                                                                              gCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGTCTGTATGTGCTTCAGCCACGGCGATACCGTATACCTg    >  1:785420/1‑150 (MQ=255)                                                                                                                                                tGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGaa  >  2:156384/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                    TACGTCGGCGGTATCAAGCTCAGCGCCAGCCGCGACCTGGACGTGCACTGGTGCCGGCCTGACGAATACGGCTACCGCTCGCTGCGCCGGGCGGCCAAGCATGCCAAGGGCACAGACAAAGAGGTGCGGGCAGCCGAGAAGGCTGAGCACCAGCGCCTGGACGACCTCTGGAAAGCACACTGCCCGGACGCTATCGACCGGGACGAAATGTGGGAGGCCATCGGCGTCGAGCGTGGCGGCATCTGGCTCAGTGGCGGTATGTGCTTCAGCCACGGCGATACCGTATACCTGAA  >  NC_002947/4419428‑4419720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.