New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5130870	48 (0.910)	3 (0.060)	3/236	NT	5.7%	coding (582/2148 nt)	recQ	ATP‑dependent DNA 3'‑5' helicase
	?	NC_002947	= 5130890	53 (1.050)					coding (562/2148 nt)	recQ	ATP‑dependent DNA 3'‑5' helicase

CGACAGGCAGTAGACGATGCCAGCGTTGCCACGACGTTCGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTACTCTGGGCGGAAATCGTGCCCCCATTGCGAAACGCAGTGGGC  >  NC_002947/5130741‑5131034                                                                                                                                                      |                                                                                                                                                 cgACAGGCAGTAGACGATGCCAGCGTTGCCACGACGTTCGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTtgcaggtgcag                                                                                                                                                  <  1:227136/150‑1 (MQ=255)  gACAGGCAGTAGACGATGCCAGCGTTGCCACGACGTTCGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGg                                                                                                                                                 >  2:1117813‑M2/1‑149 (MQ=255)             gACGATGCCAGCGTTGCCACGACGTTCGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGAt                                                                                                                                      <  2:1335164/150‑1 (MQ=255)                     cAGCGTTGCCACGACGTTCGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTcgc                                                                                                                              >  1:271237/1‑150 (MQ=255)                       gCGTTGCCACGACGTTCGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCgg                                                                                                                            <  2:682920/150‑1 (MQ=255)                       gCGTTGCCACGACGTTCGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCgg                                                                                                                            >  2:111709/1‑150 (MQ=255)                           tGCCACGACGTTCGCCGAGGAAGGCCATAAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTc                                                                                                                        <  1:1047463/150‑1 (MQ=255)                            gCCACGACGTTTGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCg                                                                                                                       <  1:574781/150‑1 (MQ=255)                                 gacgTTCGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTc                                                                                                                        >  1:1167202/1‑144 (MQ=255)                                 gacgTTCGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTc                                                                                                                        <  2:1167202/144‑1 (MQ=255)                                  acgTTCGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGC‑CTGCACCTGCAAGGCGCCGagcgcttcctgtcgagtttcgaccggcccaacat                                                                                                                >  2:164264‑M2/1‑116 (MQ=255)                                    gTTCGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCgg                                                                                                               >  1:781546/1‑150 (MQ=255)                                       cGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCg                                                                                                            <  2:386172/150‑1 (MQ=255)                                         ccGAGGAAGGCCATCAACTGCTGGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGCCAGGAAGCGATCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTa                                                                                                          <  2:72960/150‑1 (MQ=255)                                          cGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGAGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAg                                                                                                         <  2:497822/150‑1 (MQ=255)                                                aGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTaa                                                                                                   <  1:111709/150‑1 (MQ=255)                                                       cAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAAt                                                                                            <  1:1397247/150‑1 (MQ=255)                                                         aCTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAATCGCGACAGGTAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATgc                                                                                          >  1:1243588/1‑150 (MQ=255)                                                          cTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATgcg                                                                                         >  1:815264/1‑150 (MQ=255)                                                           tGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATgcgc                                                                                        <  1:201197/150‑1 (MQ=255)                                                                     gTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCg                                                                              <  2:898839/150‑1 (MQ=255)                                                                        cctcctTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCaa                                                                                             >  1:484324/1‑132 (MQ=255)                                                                        cctcctTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCaa                                                                                             <  2:484324/132‑1 (MQ=255)                                                                        cctcctTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGaa                                                                           >  1:695925/1‑150 (MQ=255)                                                                          tcctTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAAc                                                                         >  2:321649/1‑150 (MQ=255)                                                                               gggCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTc                                                                    <  1:1171345/150‑1 (MQ=255)                                                                                     gATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAg                                                              >  2:821281/1‑150 (MQ=255)                                                                                           gTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGcc                                                        >  2:407934/1‑150 (MQ=255)                                                                                                   ggTTGGGCCGGTCGAAACTAGACCGGCAGAGCCTGGCGCTTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCa                                                <  2:1302148/149‑1 (MQ=255)                                                                                                    gTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAg                                               <  1:42431/150‑1 (MQ=255)                                                                                                     ttGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAgg                                              >  1:708226/1‑150 (MQ=255)                                                                                                     ttGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAgg                                              <  2:695925/150‑1 (MQ=255)                                                                                                         gCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGaaa                                                                          <  2:223196/118‑1 (MQ=255)                                                                                                         gCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGaaa                                                                          >  1:223196/1‑118 (MQ=255)                                                                                                                gAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCCGGTACCCTggggg                                   <  2:708226/150‑3 (MQ=255)                                                                                                                  aaCTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGc                                                                               <  1:1392803/104‑1 (MQ=255)                                                                                                                  aaCTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGc                                                                               >  2:1392803/1‑104 (MQ=255)                                                                                                                     tCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCgg                                                                                                                            >  2:24779/1‑56 (MQ=255)                                                                                                                     tCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCgg                                                                                                                            <  1:24779/56‑1 (MQ=255)                                                                                                                     tCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTACTCTGGGCGGAAAt                              >  2:1334760/1‑150 (MQ=255)                                                                                                                     tCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTACTCTGGGCGGAAAt                              >  2:1166253/1‑150 (MQ=255)                                                                                                                            gAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTAct                                          <  1:1113123/131‑1 (MQ=255)                                                                                                                            gAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTAct                                          >  2:1113123/1‑131 (MQ=255)                                                                                                                            gAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTACTCTGGGCGGAAATCGTGccc                       <  2:1243588/150‑1 (MQ=255)                                                                                                                                cgcTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATTGCGGCCGTAGCGGTAAGAACATCACACGTCTGAACTCCAGTCACTTGTGCCAGCTGGCCCAGCTGCAGGTACTCTGGGCGGAGATCGTGCCCCCAt                   >  1:1033367/1‑150 (MQ=255)                                                                                                                                cgcTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTACTCTGGGCGGAAATCGTGCCCCCAt                   >  2:189082/1‑150 (MQ=255)                                                                                                                                 gcTCGGCGCCTTGCAGGTGCAGgcgcttcctgtcgagtttcgaccggcccaacatcttttaccgcatcgtgcccaagga                                                                                         >  1:899696‑M2/1‑22 (MQ=255)                                                                                                                                 gcTCGGCGCCTTGCAGGTGCAGgcgcttcctgtcgagtttcgaccggcccaacatcttttaccgcatcgtgcccaagga                                                                                         <  2:899696‑M2/79‑58 (MQ=255)                                                                                                                                 gcTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAAc                                                                         >  1:729783/1‑95 (MQ=255)                                                                                                                                 gcTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAAc                                                                         <  2:729783/95‑1 (MQ=255)                                                                                                                                   tCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAg                                                                                                  >  2:1000240/1‑68 (MQ=255)                                                                                                                                   tCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAg                                                                                                  <  1:1000240/68‑1 (MQ=255)                                                                                                                                   tCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTACTCTGGGCGGAAATCGTGCCCCCATTGc                >  2:361347/1‑150 (MQ=255)                                                                                                                                           ttGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCgg                                                                  >  2:612675/1‑92 (MQ=255)                                                                                                                                           ttGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCgg                                                                  <  1:612675/92‑1 (MQ=255)                                                                                                                                              ccagttcaggCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGTGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTACTCTGGGCGGAAATCGTGCCCCCATTGCGAAACGCAGTg     >  2:1422404/7‑150 (MQ=255)                                                                                                                                              caggtgcaggCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTACTCTGGGCGGAAATCGTGCCCCCATTGCGAAACGCAGTg     <  2:271237/150‑1 (MQ=255)                                                                                                                                                 gtgcaggCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTACTCTGGGCGGAAATCGTGCCCCCATTGCGAAACGCAGTGGGc  >  2:33371/1‑150 (MQ=255)                                                                                                                                                 gtgcaggCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCCGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTACTCTGGGCGGAAATCGTGCCCCCATTGCGAAACGCAGTGGGc  >  1:456042/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                 CGACAGGCAGTAGACGATGCCAGCGTTGCCACGACGTTCGCCGAGGAAGGCCATCAACTGCTTGCGCGGTGCCTCCTTGGGCACGATGCGGTAAAAGATGTTGGGCCGGTCGAAACTCGACAGGAAGCGCTCGGCGCCTTGCAGGTGCAGGCGCTGAACGATCTCCTCGCGGGTTCGCATGTCGGCCGTAGCGGTAAGCGCAATGCGCGGCACATGCGGAAACAGTTCGGCCAGCTGGCCCAGCTGCAGGTACTCTGGGCGGAAATCGTGCCCCCATTGCGAAACGCAGTGGGC  >  NC_002947/5130741‑5131034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.