New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5621093	47 (0.890)	5 (0.100)	4/238	NT	10.4%	coding (222/774 nt)	PP_4939	hypothetical protein
	?	NC_002947	= 5621110	41 (0.810)					coding (205/774 nt)	PP_4939	hypothetical protein

ATGTTGGGACTGACATCCAGGATGGCCTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTC  >  NC_002947/5620962‑5621245                                                                                                                                                     |                                                                                                                                        aTGTTGGGACTGACATCCAGGATGGCCTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGg                                                                                                                                        >  2:490068‑M2/1‑149 (MQ=255)      gggACTGACATCCAGGATGGCCTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGAc                                                                                                                                   <  1:489087/150‑1 (MQ=255)           tGACATCCAGGATGGCCTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGCACGTTAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAaca                                                                                                                              >  1:672583/1‑150 (MQ=255)             aCATCCAGGATGGCCTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACAcc                                                                                                                            <  1:276448/150‑1 (MQ=255)             aCATCCAGGATGGCCTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACAcc                                                                                                                            >  1:431008/1‑150 (MQ=255)             aCATCCAGGATGGCCTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGGCTTCGCAGTGAACAATGTACGGCGTCTTGAACTGGCTGTAGGCCAGGTCGATAAACGGCAACTGGCCAAGTTTGGGCCGGTGGCCGAACAcc                                                                                                                            >  1:368826/1‑150 (MQ=255)                  cAGGATGGCCTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGg                                                                                                                                        >  2:686293‑M2/1‑132 (MQ=255)                  cAGGATGGCCTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGg                                                                                                                                        <  1:686293‑M2/133‑2 (MQ=255)                     gATGGCCTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCATCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTg                                                                                                                    >  2:1058412/1‑150 (MQ=255)                      aTGGCCTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGc                                                                                                                   <  2:1362658/150‑1 (MQ=255)                          ccTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCt                                                                                                               >  1:612940/1‑150 (MQ=255)                                  tCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTgc                                                                                                       <  1:77212/150‑1 (MQ=255)                                    ttCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAATTTTGGGCCGGTTGACGAACACCTTGCAGTCGGGCTTCCAGTgcgc                                                                                                     >  1:626179/1‑150 (MQ=255)                                      cGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCg                                                                                                   <  1:1416627/150‑1 (MQ=255)                                       gACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCgg                                                                                                  >  2:672243/1‑150 (MQ=255)                                        aCAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGc                                                                                                 >  2:1141897/1‑150 (MQ=255)                                          aaaGGCTTGGCGATATAATTGCCAGTCGTCTGCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGcac                                                                                               >  2:415396/1‑150 (MQ=255)                                          aaaGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGAc                                                                                                                                   >  2:185320/1‑114 (MQ=255)                                          aaaGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGAc                                                                                                                                   <  1:185320/114‑1 (MQ=255)                                                ttGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGc                                                                                         <  2:454092/150‑1 (MQ=255)                                                      aTAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGcac                                                                                   >  1:333690/1‑150 (MQ=255)                                                               ccAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCtt                                                                                                              <  1:55923/114‑1 (MQ=255)                                                               ccAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCtt                                                                                                              >  2:55923/1‑114 (MQ=255)                                                                                gAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGtga                                                         <  1:166121/150‑1 (MQ=255)                                                                                 aaaaaTGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGtgat                                                        <  1:533967/150‑1 (MQ=255)                                                                                           ggCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGtgat                                                        <  1:271201/140‑1 (MQ=255)                                                                                           ggCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGtgat                                                        >  2:271201/1‑140 (MQ=255)                                                                                                cTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAAt                                         >  2:1270577/1‑150 (MQ=255)                                                                                                 ttGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATg                                        <  1:1058412/150‑1 (MQ=255)                                                                                                      cTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGgcgc                                   >  2:622765/1‑150 (MQ=255)                                                                                                      cTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGgcgc                                   >  1:606231/1‑150 (MQ=255)                                                                                                       tGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGcgcg                                  >  2:454318/1‑150 (MQ=255)                                                                                                           tGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATg                                        <  2:743100/140‑1 (MQ=255)                                                                                                           tGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATg                                        >  1:743100/1‑140 (MQ=255)                                                                                                            gTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGtgtt                             <  1:415396/150‑1 (MQ=255)                                                                                                             tAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGtgttg                            >  2:764758/1‑150 (MQ=255)                                                                                                             tAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGtgttg                            <  2:672583/150‑1 (MQ=255)                                                                                                                gCCAGGTCGATAGACGGCAACTGGGAAAGTTAGAGCTGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGACAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAg                         >  1:337738/1‑150 (MQ=255)                                                                                                                gCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAg                         <  1:454318/150‑1 (MQ=255)                                                                                                                    ggTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGAt                     <  1:906227/150‑1 (MQ=255)                                                                                                                     gTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATc                    <  2:606231/150‑1 (MQ=255)                                                                                                                         aTAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGaaa                <  1:1052857/150‑1 (MQ=255)                                                                                                                             aCGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGgt                                >  1:64927/1‑130 (MQ=255)                                                                                                                             aCGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGgt                                <  2:64927/130‑1 (MQ=255)                                                                                                                               ggCAACTGGCCAAGTTTGGGCCGgttgccgtctatcgacctggcctacagccaggtcaagacgccgtacatttttcactgcga                                                                             <  1:584737‑M2/83‑61 (MQ=255)                                                                                                                               ggCAACTGGCCAAGTTTGGGCCGgttgccgtctatcgacctggcctacagccaggtcaagacgccgtacatttttcactgcga                                                                             >  2:584737‑M2/1‑23 (MQ=255)                                                                                                                               ggCAACTGGCCAAGTTTGGGCCGgttgccgtctatcgacctggcctacagccaggtcaagacgccgtacatttttcac                                                                                  <  2:813857‑M2/78‑56 (MQ=255)                                                                                                                               ggCAACTGGCCAAGTTTGGGCCGgttgccgtctatcgacctggcctacagccaggtcaagacgccgtacatttttcac                                                                                  >  1:813857‑M2/1‑23 (MQ=255)                                                                                                                                gCAACTGGCCAAGTTTGGGCCGgttgccgtctatcgacctggcctacagccaggtcaagacgccgtacatttttcactgcgaagacgactggcaattctatcgccaaggctttgtcgaagactcgcaggccatcctggatgtcagtccca         <  2:1103161‑M2/150‑129 (MQ=255)                                                                                                                                gCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCaa         <  1:622765/150‑1 (MQ=255)                                                                                                                                  aaCTGGACAAGTTTGGGCCGGTTGACGAACAACTTCCAGTGCGGCTTCCAGTGACCTGGCACATCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAgg       <  2:337738/150‑1 (MQ=255)                                                                                                                                       gCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTc  <  2:612940/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                        ATGTTGGGACTGACATCCAGGATGGCCTGCGAGTCTTCGACAAAGCCTTGGCGATAGAATTGCCAGTCGTCTTCGCAGTGAAAAATGTACGGCGTCTTGACCTGGCTGTAGGCCAGGTCGATAGACGGCAACTGGCCAAGTTTGGGCCGGTTGACGAACACCTTGCAGTGCGGCTTCCAGTGCGCCGGCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTC  >  NC_002947/5620962‑5621245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.