New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5775531 =	49 (0.930)	4 (0.080)	4/236	NT	8.2%	coding (1342/1473 nt)	betB	NAD‑dependent betaine aldehyde dehydrogenase
	?	NC_002947	5775547 =	42 (0.830)					coding (1358/1473 nt)	betB	NAD‑dependent betaine aldehyde dehydrogenase

TGCCAACGACACCGACTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGAGCTGGGCGGCTACAACTCGGTTTTCTGAACCCTGTCTAGCCCCGCCCGTGCCAC  >  NC_002947/5775410‑5775688                                                                                                                                          |                                                                                                                                              tGCCAACGACACCGACTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACaa                                                                                                                                   <  1:1402192/150‑1 (MQ=255) tGCCAACGACACCGACTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACaa                                                                                                                                   <  1:206226/150‑1 (MQ=255) tGCCAACGACACCGACTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACaa                                                                                                                                   <  2:1061885/150‑1 (MQ=255) tGCCAACGACACCGACTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATAATCCACATGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACaa                                                                                                                                   <  2:409207/150‑1 (MQ=255)    cAACGACACCGACTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAg                                                                                                                                             >  2:350309/1‑137 (MQ=255)    cAACGACACCGACTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAg                                                                                                                                             <  1:350309/137‑1 (MQ=255)     aaCGACACCGACTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAg                                                                                                                               >  2:721172/1‑150 (MQ=255)     aaCGACACCGACTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAg                                                                                                                               >  1:1354145/1‑150 (MQ=255)      aCGACACCGACTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGt                                                                                                                              <  2:1354145/150‑1 (MQ=255)         gaaaaccgagttgtagccgcccagctcgacctggaccgacttgatgcgagtgtattgagccagcgagctgacgccgttttcacggccgacgcccgactgcttgtagccacctaccggccgaaatgccggTAGGTGGCTACAAGCAGTc                                                                                                                             >  1:1341024‑M2/130‑148 (MQ=255)         gaaaaccgagttgtagccgcccagctcgacctggaccgacttgatgcgagtgtattgagccagcgagctgacgccgttttcacggccgacgcccgactgcttgtagccacctaccggccgaaatgccggTAGGTGGCTACAAGCAGTc                                                                                                                             <  2:1341024‑M2/19‑1 (MQ=255)               aCTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTATGAGCAGTCGGGCGTCg                                                                                                                     <  2:1059545/150‑1 (MQ=255)               aCTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCAGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCg                                                                                                                     >  2:637228/1‑150 (MQ=255)                    ggCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGt                                                                                                                <  1:721172/150‑1 (MQ=255)                      ccTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTTGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGa                                                                                                              >  2:1276301/1‑150 (MQ=255)                         ggCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGaaaa                                                                                                           <  1:1124805/150‑1 (MQ=255)                           ccgccgGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACg                                                                                                         >  2:901503/1‑150 (MQ=255)                           ccgccgGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACg                                                                                                         >  2:585526/1‑150 (MQ=255)                                 gCGTCTGCACCAACGACATCACCCTCGCCTATCGCATCACCCACACGCTCGAAATCGGTACCCCGTGTATCACCCCCTGGGGTCAATCGCCGGCCGAAATGTCAGTAGCGGACCACAAGCAGTCGCCCGGCGGCCGTGAAAACAGCGtaa                                                                                                   <  2:592537/150‑3 (MQ=255)                                        cACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCt                                                                                            <  2:816777/150‑1 (MQ=255)                                          ccAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCATCAGCTCGCTgg                                                                                          >  2:129674/1‑150 (MQ=255)                                                 cATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTCTGCACAATCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATa                                                                                   <  2:1059004/150‑1 (MQ=255)                                                    cACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATacat                                                                                <  2:930137/150‑2 (MQ=255)                                                      cccGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTc                                                                              <  1:585526/150‑1 (MQ=255)                                                       ccGCGCCCACCGCGTCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGTCGTCGGCCGTGAAAAAGGCGTCCGCTCGCTGGCTCAATACACTcc                                                                             >  2:142308/1‑149 (MQ=255)                                                       ccGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCg                                                                             >  2:835820/1‑150 (MQ=255)                                                               aCCGCATACACCACAGGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGt                                                                     >  2:59540/1‑150 (MQ=255)                                                                 cGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATTAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCg                                                                                                      >  1:629982/1‑115 (MQ=255)                                                                 cGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCg                                                                                                      <  2:629982/115‑1 (MQ=255)                                                                  gCATCATCCACAAGCTCGAAGCCAGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCgg                                                                  <  1:637228/150‑1 (MQ=255)                                                                        tcCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGTGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAgg                                                            >  1:1355073/1‑150 (MQ=255)                                                                        tcCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACgg                                                                                                        >  1:1094562/1‑106 (MQ=255)                                                                        tcCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACgg                                                                                                        <  2:1094562/106‑1 (MQ=255)                                                                          cacaAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTc                                                          >  2:293830/1‑150 (MQ=255)                                                                           acaAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACGAGCAGTCGGGCGTCGGCCGTGAAAAc                                                                                                          <  1:1262751/101‑1 (MQ=255)                                                                           acaAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACGAGCAGTCGGGCGTCGGCCGTGAAAAc                                                                                                          >  2:1262751/1‑101 (MQ=255)                                                                           acaAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCCGCAGGGCGTCGGCCATGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCg                                                         >  1:247044/1‑150 (MQ=255)                                                                                 tCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGAGCTgg                                                   <  2:584666/150‑1 (MQ=255)                                                                                   gAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGAGTTGggc                                                 >  1:832231/1‑150 (MQ=255)                                                                                             gccgacgcccgactgcttgtagccacctaCCGGCCGAAATGCCGGTAg                                                                                                                                             >  2:415325‑M1/30‑48 (MQ=255)                                                                                             gccgacgcccgactgcttgtagccacctaCCGGCCGAAATGCCGGTAg                                                                                                                                             <  1:415325‑M1/19‑1 (MQ=255)                                                                                               tgctgGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGAGCTGGGCGGCTACAACTCg                                     >  1:953635/1‑150 (MQ=255)                                                                                               tgctgGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGAGCTGGGCGGCTACAACTCg                                     <  1:142308/150‑1 (MQ=255)                                                                                                      tCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGAGCTGGGCGGCTACAACTCGGTTTTCt                              <  1:835820/150‑1 (MQ=255)                                                                                                       gactgcttgtagccacctaCCGGCATTTCGGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGAGCTGGGCGGCTACAACTCGGTTTTc                               >  1:1341024‑M1/20‑148 (MQ=255)                                                                                                       gactgcttgtagccacctaCCGGCATTTCGGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGAGCTGGGCGGCTACAACTCGGTTTTc                               <  2:1341024‑M1/129‑1 (MQ=255)                                                                                                             cTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGa                                                        <  2:233784/117‑1 (MQ=255)                                                                                                             cTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGa                                                        >  1:233784/1‑117 (MQ=255)                                                                                                                  gTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCATGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGAGCTGGGCGGCTACAACTCGGTTTTCTGAACCCTGTCTa                  <  2:247044/150‑1 (MQ=255)                                                                                                                       tCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGAGCTGGGCGGCTACAACTCGGTTTTCTGAACCCTGTCTAGcccc             <  1:129674/150‑1 (MQ=255)                                                                                                                       ctaccggcatttcggccggTAGGTGGCTACAAGCAGTCGGGCGTCGGc                                                                                                                   >  2:415325‑M2/20‑48 (MQ=255)                                                                                                                       ctaccggcatttcggccggTAGGTGGCTACAAGCAGTCGGGCGTCGGc                                                                                                                   <  1:415325‑M2/29‑1 (MQ=255)                                                                                                                                  aaTGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGACGTGAGCTCACTGGCTCAATACACTAGCATCAAGTCGGTCCAGGTCGAGCTGGGCGGCTACAACTCGGTTTTCTGAACCCTGTCTAGCCCCGCCCGTGCCAc  >  1:11413/1‑150 (MQ=255)                                                                                                                                          |                                                                                                                                              TGCCAACGACACCGACTACGGCCTGGCCGCCGGCGTCTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTCGAAGCCGGTATCTGCTGGATCAACGCCTGGGGTGAATCGCCGGCCGAAATGCCGGTAGGTGGCTACAAGCAGTCGGGCGTCGGCCGTGAAAACGGCGTCAGCTCGCTGGCTCAATACACTCGCATCAAGTCGGTCCAGGTCGAGCTGGGCGGCTACAACTCGGTTTTCTGAACCCTGTCTAGCCCCGCCCGTGCCAC  >  NC_002947/5775410‑5775688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.