New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6027969	40 (0.760)	10 (0.230)	8/204	NT	21.3%	intergenic (‑57/+54)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
	?	NC_002947	= 6027984	41 (0.940)					intergenic (‑72/+39)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase

GCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTC  >  NC_002947/6027840‑6028133                                                                                                                                                 |                                                                                                                                                      gCATGCTCACGCCAAGCGCCAGACCGACACTGAGCACCGATGCAAGTACGGCAAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcag                                                                                                                                                  >  1:571204‑M2/1‑145 (MQ=255)         aCGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggc                                                                                                                                          >  1:660606‑M2/1‑137 (MQ=255)              aaGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcc                                                                                                                                     >  1:215094‑M2/1‑132 (MQ=255)                        ccGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcaggagc                                                                                                                                              <  1:722873‑M2/131‑10 (MQ=255)                        ccGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcaggagc                                                                                                                                              >  2:722873‑M2/1‑122 (MQ=255)                         cGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGa                                                                                                                          >  2:1186719/1‑150 (MQ=255)                          gACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGAc                                                                                                                         >  2:1411225/1‑150 (MQ=255)                                   cACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATCTTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCGGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGt                                                                                                                >  1:989503/1‑150 (MQ=255)                                           ccAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCtt                                                                                                        <  1:1060983/150‑1 (MQ=255)                                              gTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGAc                                                                                                                         >  1:851285/1‑130 (MQ=255)                                              gTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGAc                                                                                                                         <  2:851285/130‑1 (MQ=255)                                                   gCGAAGTAGGTACCCCAACGCACTACAGCCTCCCAGCCAATATTTCCAGGGGTCCATTCGCGGGCAAGCCCGCTCCTGCAACGGTCGCTGCGACATCAACCACCGGGCCTGCCTGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAgg                                                                                                <  1:1098356/150‑1 (MQ=255)                                                           ggTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttg                                                                                                                                       <  1:1415608‑M2/103‑17 (MQ=255)                                                           ggTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttg                                                                                                                                       >  2:1415608‑M2/1‑87 (MQ=255)                                                           ggTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTc                                                                                        <  1:1376152/150‑1 (MQ=255)                                                            gTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAAAGGTCCCTCAATCCGTCAGGAGCGGGGTTGCCCGCGAAAAGGACCTACCGGCTTACAACTTGATCCAGGTCGCCTTCa                                                                                       >  1:88484/1‑150 (MQ=255)                                                               ccccAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCt                                                                                    >  1:281034/1‑150 (MQ=255)                                                                cccAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTc                                                                                   >  2:755830/1‑150 (MQ=255)                                                                 ccAACGCATTACAGCCTCCCGGCCAATATTGCAAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCg                                                                                  <  2:443735/150‑1 (MQ=255)                                                                  cAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCgg                                                                                 >  1:890873/1‑150 (MQ=255)                                                                        aTTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTc                                                                                              >  2:1004470/1‑131 (MQ=255)                                                                        aTTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTc                                                                                              <  1:1004470/131‑1 (MQ=255)                                                                             aGCCTCCCAGCCAATATTTCCAGGGGCCCATTTCCGCGCGAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTcc                                                                      >  1:179178/1‑150 (MQ=255)                                                                                          atatTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCgg                                                                                                                  >  1:1214756/1‑93 (MQ=255)                                                                                          atatTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCgg                                                                                                                  <  2:1214756/93‑1 (MQ=255)                                                                                             tttCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACt                                                      >  2:676431/1‑150 (MQ=255)                                                                                                    gggCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAg                                                                                                 <  2:1050148/100‑1 (MQ=255)                                                                                                    gggCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAg                                                                                                 >  1:1050148/1‑100 (MQ=255)                                                                                                          aTTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGtt                                         <  2:281034/150‑1 (MQ=255)                                                                                                              gCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGccc                                     <  1:870597/150‑1 (MQ=255)                                                                                                                gggCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGa                                   <  1:1108496/150‑1 (MQ=255)                                                                                                                  gCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACt                                 >  1:1310929/1‑150 (MQ=255)                                                                                                                  gCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCCTCAGCTCCGTCTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGCCt                                 >  2:631700/1‑150 (MQ=255)                                                                                                                     aGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGtt                              <  1:1186719/150‑1 (MQ=255)                                                                                                                      gCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGttt                             <  1:676431/150‑1 (MQ=255)                                                                                                                       cccGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctg                                                                                                        <  1:1408470‑M2/74‑48 (MQ=255)                                                                                                                       cccGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctg                                                                                                        >  2:1408470‑M2/1‑27 (MQ=255)                                                                                                                       cccGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGCGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTg                            >  2:1090095/1‑150 (MQ=255)                                                                                                                        ccGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCtt                                                                                         >  2:181033/1‑88 (MQ=255)                                                                                                                        ccGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCtt                                                                                         <  1:181033/88‑1 (MQ=255)                                                                                                                        ccGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCACGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGa                           >  2:1141585/1‑150 (MQ=255)                                                                                                                         cGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGaa                          <  1:755830/150‑1 (MQ=255)                                                                                                                          gCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgccgtactggcatcggtgctcagtgtcgggctggcgcttggcgtgagc                         <  1:818082‑M2/150‑127 (MQ=255)                                                                                                                          gCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgccgtactggcatcggtgctcagtgtcgggctggcgcttggcgtgagc                         <  1:754244‑M2/150‑127 (MQ=255)                                                                                                                          gCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgccgtactgg                                                               <  2:1218418‑M2/112‑89 (MQ=255)                                                                                                                          gCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgccgtactgg                                                               >  1:1218418‑M2/1‑24 (MQ=255)                                                                                                                            tCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGccc                                     <  1:403129/136‑1 (MQ=255)                                                                                                                            tCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGccc                                     >  2:403129/1‑136 (MQ=255)                                                                                                                             ccTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgccgtactggcatcggtgctcagt                                                 <  2:1419007‑M2/123‑103 (MQ=255)                                                                                                                             ccTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgccgtactggcatcggtgctcagt                                                 >  1:1419007‑M2/1‑21 (MQ=255)                                                                                                                              cTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGgtg                                                                               <  2:173976/92‑1 (MQ=255)                                                                                                                              cTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGgtg                                                                               >  1:173976/1‑92 (MQ=255)                                                                                                                               tGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCAcc                    <  1:1411225/150‑1 (MQ=255)                                                                                                                                  aaCGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgc                                                                       <  2:236521‑M2/96‑81 (MQ=255)                                                                                                                                  aaCGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgc                                                                       >  1:236521‑M2/1‑16 (MQ=255)                                                                                                                                   aCGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGt                                                   >  2:1288946/1‑115 (MQ=255)                                                                                                                                   aCGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGt                                                   <  1:1288946/115‑1 (MQ=255)                                                                                                                                           gAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGt        >  1:529548/1‑150 (MQ=255)                                                                                                                                                 cTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATACAGGTCACCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACTGCGCGGTCATGTc  >  2:89052/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                      GCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGTC  >  NC_002947/6027840‑6028133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.