New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6115179	47 (0.890)	4 (0.080)	4/224	NT	8.6%	coding (564/1287 nt)	PP_5365	fatty acid methyltransferase
	?	NC_002947	= 6115207	42 (0.880)					coding (536/1287 nt)	PP_5365	fatty acid methyltransferase

CTCCTTGCTCAGGGTAATGCCGAACACCTTGGCGCCATATTCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTGGACACGTCATAGTGGTAGGAGATTGCCTTGGCGTCGGTGGTCTTGTCATGA  >  NC_002947/6115062‑6115350                                                                                                                                                  |                                                                                                                                                cTCCTTGCTCAGGGTAATGCCGAACACCTTGGCGCCATATTCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTAACCGGCATCCCGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTgctg                                                                                                                                             <  2:6258‑M2/150‑5 (MQ=255)        cTCAGGGTAATGCCGAACACCTTGGCGCCATATTCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTgctgcgcctgg                                                                                                                                      <  2:315450‑M2/150‑12 (MQ=255)            gggTAATGCCGAACACCTTGGCGCCATATTCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGa                                                                                                                                  <  1:522431/150‑1 (MQ=255)              gTAATGCCGAACACCTTGGCGCCATATTCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGc                                                                                                                                <  2:853152/150‑1 (MQ=255)              gTAATGCCGAACACCTTGGCGCCATATTCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGc                                                                                                                                <  1:512037/150‑1 (MQ=255)                 aTGCCGAACACCTTGGCGCCATATTCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGTTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTa                                                                                                                             <  2:637011/150‑1 (MQ=255)                  tGCCGAACACCTTGGCGCCATATTCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTAt                                                                                                                            >  1:1215993/1‑150 (MQ=255)                  tGCCGAACACCTTGGCGCCATATTCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTAt                                                                                                                            >  2:475856/1‑150 (MQ=255)                   gCCGAACACCTTGGCGCCATATTCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTAtt                                                                                                                           <  2:229928/150‑1 (MQ=255)                      gAACACCTTGGCGCCATATTCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTc                                                                                                                        <  1:1395245/150‑1 (MQ=255)                                        ttCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGgc                                                                                                      >  1:1075034/1‑150 (MQ=255)                                           aCGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCa                                                                                                   <  1:1144175/150‑1 (MQ=255)                                               gCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGaa                                                                                               >  2:188852/1‑150 (MQ=255)                                                  gCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAg                                                                                            <  2:451215/150‑1 (MQ=255)                                                   cGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAgg                                                                                           <  1:709195/150‑1 (MQ=255)                                                    gAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGc                                                                                          <  1:475856/150‑1 (MQ=255)                                                           gcCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGGGCCTGGTCGACCGTATTGTCCGGCTCACGGAAGAAGGCGCAGGAATAGGCCATGTcc                                                                                   >  1:1255024/1‑150 (MQ=255)                                                           gcCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTcc                                                                                   <  1:188852/150‑1 (MQ=255)                                                             cAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTg                                                                                 <  1:1232403/150‑1 (MQ=255)                                                                     cccAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGcc                                                                         >  1:128943/1‑150 (MQ=255)                                                                          ccacagccaACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTc                                                                                                                                    >  1:421280/1‑86 (MQ=255)                                                                          ccacagccaACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTc                                                                                                                                    <  2:421280/86‑1 (MQ=255)                                                                            acagccaACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTAGTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGAGGCAGCCAAAGCTg                                                                  >  1:293534/1‑150 (MQ=255)                                                                                 caACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGa                                                             >  2:345643/1‑150 (MQ=255)                                                                                  aaCATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGaa                                                            >  1:600424/1‑150 (MQ=255)                                                                                        gAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCGTGGTCGAGCGTTTTGTCCGGCTAACGGAAGTAGGCGCAGGAATAGGCGATGTCCTGGTCCAGCCAAAGTTGGTAGAACGCGtt                                                      >  2:605822/1‑150 (MQ=255)                                                                                        gAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGtt                                                      >  2:605891/1‑150 (MQ=255)                                                                                        gAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGtt                                                      <  2:1075034/150‑1 (MQ=255)                                                                                         aGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTg                                                     <  2:610574/150‑1 (MQ=255)                                                                                         aGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTg                                                     >  1:887741/1‑150 (MQ=255)                                                                                         aGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTg                                                     <  2:600424/150‑1 (MQ=255)                                                                                           cAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTGGa                                                   <  1:426871/150‑1 (MQ=255)                                                                                           cAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTGGa                                                   <  2:856528/150‑1 (MQ=255)                                                                                              gTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTgg                                                                 >  2:1344439/1‑133 (MQ=255)                                                                                              gTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTgg                                                                 <  1:1344439/133‑1 (MQ=255)                                                                                                          aTCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTgctgcgcctggatgccggtgactacctgctcgatgttggctgtggctggggcgggctggcgcg                                                                                  >  1:69162‑M2/1‑41 (MQ=255)                                                                                                          aTCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTgctgcgcctggatgccggtgactacctgctcgatgttggctgtggctggggcgggctggcgcg                                                                                  <  2:69162‑M2/104‑64 (MQ=255)                                                                                                            ccAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCa                                                                                        >  2:290676/1‑96 (MQ=255)                                                                                                            ccAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCa                                                                                        <  1:290676/96‑1 (MQ=255)                                                                                                             cAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGATACCCCGGTTCGAGCGTCTTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTGGACACGTCATAGTGGTAGga                                 >  2:49334/1‑150 (MQ=255)                                                                                                                gcgcAGCTTGCGGCACAGGTGGTCGAACTTGTCCTgctgcgcctggatgccggtgactacctgctcgatgttggctgtggctggggcgggctggcgcggttcgctgcccgtgaa                                                                  >  1:619447‑M2/1‑35 (MQ=255)                                                                                                                gcgcAGCTTGCGGCACAGGTGGTCGAACTTGTCCTgctgcgcctggatgccggtgactacctgctcgatgttggctgtggctggggcgggctggcgcggttcgctgcccgtgaa                                                                  <  2:619447‑M2/114‑80 (MQ=255)                                                                                                                 cgcAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTGGACACGTCATAGTGGTAGGAGAtt                             <  1:315450/150‑1 (MQ=255)                                                                                                                                     gtCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTGGACACGTCATAGTGGTAGGAGATTGCCTTGGCGTCgg                >  2:363518/1‑143 (MQ=255)                                                                                                                                     gtCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTGGACACGTCATAGTGGTAGGAGATTGCCTTGGCGTCgg                <  1:363518/143‑1 (MQ=255)                                                                                                                                      tCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTGGGACACGTCATAGTGGTAGGAGATTGCCTTGGCGTCGGTGGTCTTg        >  1:590087/1‑150 (MQ=255)                                                                                                                                      tCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGCCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTGGACACGTCATAGTGGTAGGAGATTGCCTGGGCGTCGGTGGTCTTg        >  2:407118/1‑150 (MQ=255)                                                                                                                                       cGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTGGACACGTCATAGTGGTAGGAGATTGCCTTGGCGTCGGTGGTCTTGt       <  2:1215993/150‑1 (MQ=255)                                                                                                                                          aCTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTa                                                               >  1:41948/1‑91 (MQ=255)                                                                                                                                          aCTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTa                                                               <  2:41948/91‑1 (MQ=255)                                                                                                                                            ttGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTGGACACGTCATAGTGGTAGGAGATTGCCTTGGCGTCGGTGGTCTTGTCATga  <  2:887741/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                CTCCTTGCTCAGGGTAATGCCGAACACCTTGGCGCCATATTCACGGGCAGCGAACCGCGCCAGCCCGCCCCAGCCACAGCCAACATCGAGCAGGTAGTCACCGGCATCCAGGCGCAGCTTGCGGCACAGGTGGTCGAACTTGTCCTGCTGCGCCTGGTCGAGCGTATTGTCCGGCTCACGGAAGTAGGCGCAGGAATAGGCCATGTCCTGGTCCAGCCAAAGCTGGTAGAACGCGTTGGACACGTCATAGTGGTAGGAGATTGCCTTGGCGTCGGTGGTCTTGTCATGA  >  NC_002947/6115062‑6115350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.