| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 364569 = | 61 (1.930) | 6 (0.210) | 5/226 | NT | 10.8% | intergenic (‑33/+91) | PP_0303/caiX | dehydrocarnitine cleavage enzyme/carnitine uptake ABC transporter substrate‑binding protein |
| ? | NC_002947 | 364652 = | 44 (1.520) | intergenic (‑116/+8) | PP_0303/caiX | dehydrocarnitine cleavage enzyme/carnitine uptake ABC transporter substrate‑binding protein | |||||
GAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/364722‑364569‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaaaGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTGGCGGGCTGATTCCAGCGCGTCCTTGT > NC_002947/364652‑364790 GAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGC < 2:651448/150‑1GAGGGGCTGACCACCTTCGATGGGAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAGGGCTCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGC < 2:183348/150‑1 CTGACAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGA > 2:182137/1‑150 GACAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAG < 1:182137/150‑1 AAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCTTGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCA > 1:3213/1‑150 CCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGG > 1:501805/1‑150 tttcGCGGGCAAGCCCGCGAAAGGGCCCTGTTAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGA < 1:349394/124‑1 tttcGCGGGCAAGCCCGCGAAAGGGCCCTGTTAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGA > 2:349394/5‑128 TGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTGGCGGGCTGATTCCAGCGCGTCCTTGT < 2:742953/150‑1 CCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGT > 1:119169/1‑70 CCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGT < 2:119169/70‑1 GAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/364722‑364569‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaaaGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTGGCGGGCTGATTCCAGCGCGTCCTTGT > NC_002947/364652‑364790 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |