| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 594773 | 44 (1.390) | 6 (0.200) | 6/240 | NT | 13.1% | intergenic (‑9/+118) | PP_0505/PP_0506 | hypothetical protein/ABC transporter permease |
| ? | NC_002947 | = 594859 | 37 (1.210) | intergenic (‑95/+32) | PP_0505/PP_0506 | hypothetical protein/ABC transporter permease | |||||
CTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/594699‑594773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCAATGCACATGCTGCTGGCCTTGCTGTTGCTGGTAGCGATGCCTCTATGGGCCGC < NC_002947/594859‑594712 CTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCT‑CTTCGCGGGCATGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGT > 1:175237/1‑138CTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCT‑CTTCGCGGGCATGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGT < 2:175237/138‑1 CTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGCATGC > 2:346527/1‑150 TAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCAA < 1:346527/150‑1 AGCAAGGCCAGCAGCATGTGCATTGCCGGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGG < 1:803148/98‑1 AGCAAGGCCAGCAGCATGTGCATTGCCGGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGG > 2:803148/1‑98 CTGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCAATGCACATGCTGCTGGCCTTGCTGTTGCTGGTAGCGATGCCTCTATGGGCCGC > 2:812532/1‑150 CTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/594699‑594773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctGCTTCGCGGGCACGCCCGCTCCCACAGGGAGCCCCGCAGGCTTTGGAGCTTGTGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCAATGCACATGCTGCTGGCCTTGCTGTTGCTGGTAGCGATGCCTCTATGGGCCGC < NC_002947/594859‑594712 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |