New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 594773 | 44 (1.390) | 6 (0.200) | 6/240 | NT | 13.1% | intergenic (‑9/+118) | PP_0505/PP_0506 | hypothetical protein/ABC transporter permease |
? | NC_002947 | = 594859 | 37 (1.210) | intergenic (‑95/+32) | PP_0505/PP_0506 | hypothetical protein/ABC transporter permease |
ACATGTCGTGCAGCGGCGCCAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGC > NC_002947/594626‑594921 | aCATGTCGTGCAGCGGCGCCAGTTGTGGCGGGATGAACGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGCTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCctct > 1:322812/1‑150 (MQ=255) tGTCGTGCAGCGGCGCCAGTTGTGGCGGGATGACCGGGGCGCCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTcg > 1:812532/1‑150 (MQ=255) gTGCAGCGGCGCCAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCggg < 2:233458/150‑1 (MQ=255) gcggcgCCAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGc > 2:377182/1‑150 (MQ=255) cAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTCCGCGGGCATGCCCGcgaa < 2:769086/150‑4 (MQ=255) ttGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCcac > 2:62035/1‑150 (MQ=255) gtgGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAg < 1:784741/150‑1 (MQ=255) ggATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTg > 1:304623/1‑150 (MQ=255) ttCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTGGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCACAGcc > 1:520620/1‑150 (MQ=255) ttCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGcc > 1:18596/1‑150 (MQ=255) tCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCg > 2:548218/1‑146 (MQ=255) tCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCg < 1:548218/146‑1 (MQ=255) tGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTccc > 1:179985/1‑150 (MQ=255) gggCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGcgaa > 1:758811/1‑105 (MQ=255) gggCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGcgaa < 2:758811/108‑4 (MQ=255) gCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTgg > 2:509182/1‑150 (MQ=255) cTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTcttcgcgggcatgcccgctcccacagggagccccgcaggctttggagcttgtgcagtacctgt > 1:175237‑M1/1‑75 (MQ=255) cTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTcttcgcgggcatgcccgctcccacagggagccccgcaggctttggagcttgtgcagtacctgt < 2:175237‑M1/138‑64 (MQ=255) cTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGt < 1:509182/150‑1 (MQ=255) cTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTgcttcgcgggcacgcccgctcccacagggagccccgcaggctttggagcttgtgcagtacctgtgggagcgggcatgc > 2:346527‑M1/1‑72 (MQ=255) ttGTGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGt < 1:250422/146‑1 (MQ=255) ttGCGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGt > 2:250422/1‑146 (MQ=255) gTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGa > 2:611753/1‑150 (MQ=255) gcggcCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCag > 2:812532‑M2/1‑148 (MQ=255) cccATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCgg < 1:644923/150‑1 (MQ=255) cccATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCgg > 1:218240/1‑150 (MQ=255) aTAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGa > 1:591816/1‑150 (MQ=255) tAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTgcttcgcgggcacgcccgctcccacagggagccccgcaggctttggagcttgtgcagtacctgtgggagcgggcatgcccgcgaagaggccggcaa < 1:346527‑M1/150‑97 (MQ=255) ggCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGgtgt < 1:611753/150‑1 (MQ=255) gCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGtt < 2:218240/150‑1 (MQ=255) cATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGCGCTCCCTGTGGGAGCGCGCGTGCCCGCGAAGCAGGCGGTGAGGTGttt < 2:388380/150‑1 (MQ=255) cTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCa > 2:338463/1‑150 (MQ=255) cagcaacagcaaGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGccc < 2:782974/118‑1 (MQ=255) cagcaacagcaaGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGccc > 1:782974/1‑118 (MQ=255) gcaacagcaaGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTAcgc < 2:18596/150‑1 (MQ=255) agcaaGGCCAGCAGCATGTGCATTGCCGGCCTgcttcgcgggcacgcccgctcccacagggagccccgcaggctttggagcttgtgcagtacctgtgg < 1:803148‑M1/98‑67 (MQ=255) agcaaGGCCAGCAGCATGTGCATTGCCGGCCTgcttcgcgggcacgcccgctcccacagggagccccgcaggctttggagcttgtgcagtacctgtgg > 2:803148‑M1/1‑32 (MQ=255) agcaaGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCgg > 1:567980/1‑124 (MQ=255) agcaaGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCgg < 2:567980/124‑1 (MQ=255) ggCCCGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCagag < 2:352810/150‑1 (MQ=255) ggCCAGCAGCATGTGCATTGCCGGCCGCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCagag < 2:322812/150‑1 (MQ=255) cagcagCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGgtg > 2:678249/1‑150 (MQ=255) agcagcATGTGCATTGCCGGCCTCTTCGCGGACATGCCCGCTCCCACAGGCACTGCACAAGCTCCAAAGCCTGCGGCGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGGGTTTGATCATTACGCGCACTCAGAGgtgt > 2:800037/1‑150 (MQ=255) cagcaTGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTAt < 1:807935/150‑1 (MQ=255) cagcaTGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTAt < 1:678249/150‑1 (MQ=255) agcaTGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATg < 2:591816/150‑1 (MQ=255) ttGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCaggccggcaatgcacatgctgctggccttgctgttgctggtagcgatgcctcta < 1:346527‑M2/150‑55 (MQ=255) ttGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAg > 2:209435/1‑145 (MQ=255) ttGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAg < 1:209435/145‑1 (MQ=255) gCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTca < 1:62035/150‑1 (MQ=255) ccGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGa > 2:473651/1‑102 (MQ=255) ccGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGa < 1:473651/102‑1 (MQ=255) cGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGTGCGTGCCCGCGAAGCAGGCg > 1:484651/1‑97 (MQ=255) cGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCg < 2:484651/97‑1 (MQ=255) gCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTcagcca > 1:72078/1‑150 (MQ=255) ctctTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTcagccagc > 2:750612/1‑150 (MQ=255) cTgcttcgcgggcacgcccgctcccacagggagccccgcaggctttggagcttgtgcagtacctgtgggagcgggcatgcccgcgaagaggccggcaatgcacatgctgctggccttgctgttgctggtagcgatgcctctatgggccgc > 2:812532‑M1/1‑2 (MQ=255) | ACATGTCGTGCAGCGGCGCCAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGCAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGC > NC_002947/594626‑594921 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |