New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	614270 =	45 (1.420)	8 (0.340)	5/186	NT	25.1%	intergenic (‑86/+92)	dxs/ispA	1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase
	?	NC_002947	614348 =	14 (0.590)					intergenic (‑164/+14)	dxs/ispA	1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase

CCAGGCGCTGGCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/614449‑614270 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcattcgcgggtaaacccgatcctacagggATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATTGCATAGGCTTTGGCGGCTTCCAGGCCCAGCAG  >  NC_002947/614348‑614496                                                                                                                                                                                                                                                                                                                                           CCAGGCGCTGGCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGAC                                                                                                                                                                                     >  1:69894/1‑150                     AAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGA                                                                                                                                                                 <  1:575878/150‑1                       GGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATC                                                                                                                                                               >  2:72250/1‑150                             GGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAG                                                                                                                                                         >  2:685681/1‑150                              GCGAAAAGGCCGAGCCGCTGCGGGCTTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCTATCCTACAGG                                                                                                                                                        >  2:636348/1‑150                                                             GCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGG                                                                                                                                                                           >  2:736499/1‑100                                                             GCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGG                                                                                                                                                                           <  1:736499/100‑1                                                                                                                           CCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGC                                                           >  2:263934/1‑150                                                                                                                           CCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGC                                                                                           <  1:499115/118‑1                                                                                                                           CCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGC                                                                                           >  2:499115/1‑118                                                                                                                           CCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGCGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCTGCTCGGCCTTTTCGCCGAACCCTTGCAGTTCGGC                                                           >  2:245102/1‑150                                                                                                                                AATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCG                                                      >  2:252069/1‑150                                                                                                                                AATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATA                                                                                                                   <  2:109731/89‑1                                                                                                                                AATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATA                                                                                                                   >  1:109731/1‑89                                                                                                                                  TGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCC                                                    >  2:156273/1‑150                                                                                                                                                    GACGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCTTGGTCGCGCAGTTCGATT                                  <  1:252069/150‑1                                                                                                                                                                      CCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATTGCATAGGCTTTGGCGGCT                <  2:34009/150‑1                                                                                                                                                                      CCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATTGCATAGGCTTTGGCGGCT                >  1:521066/1‑150                                                                                                                                                                      CCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATTGCATAGGCTTTGGCGGCT                >  1:34009/1‑150                                                                                                                                                                       CCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATTGCATAGGCTTTGGCGGCTT               >  2:725914/1‑150                                                                                                                                                                             CTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATTGCATAGGCTTTGGCGGCTTCCAGGC         >  2:107944/1‑150                                                                                                                                                                                 AGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATTGCATAGGCTTTGGCGGCTTCCAGGCCCAG     <  1:156273/150‑1                                                                                                                                                                                   GGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATTGCATAGGCTTTGGCGGCTTCCAGGCCCAGCA   >  1:356923/1‑150                                                                                                                                                                                    GATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATTGCATAGGCTTTGGCGGCTTTCTTGCCCATCAG  >  2:662405/1‑150                                                                                                                                                                                    GATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATTGCATAGGCTTTGGCGGCTTCCAGGCCCAGCAG  >  1:708515/1‑150                                                                                                                                                                                                                                                                                                                                           CCAGGCGCTGGCCGCACTGCAAGGGTTCGGCGAAAAGGCCGAGCCGCTGCGGGCCTTGGCGCGTTATATTGTCGAACGCCGTAACTAAACAGCTTCACCTATCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/614449‑614270 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcattcgcgggtaaacccgatcctacagggATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATTGCATAGGCTTTGGCGGCTTCCAGGCCCAGCAG  >  NC_002947/614348‑614496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.