| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 614270 = | 45 (1.420) | 8 (0.340) | 5/186 | NT | 25.1% | intergenic (‑86/+92) | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
| ? | NC_002947 | 614348 = | 14 (0.590) | intergenic (‑164/+14) | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase | |||||
CAGCGCGGTCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAG > NC_002947/614121‑614403 | ctgctgggcctggaagccgccaaagcctatgcaatcgaactgcgcgaccaggcgctggccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatc > 1:708515‑M1/150‑150 (MQ=255)ctgatgggcaagaaagccgccaaagcctatgcaatcgaactgcgcgaccaggcgctggccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatc > 2:662405‑M1/150‑150 (MQ=255) tgctgggcctggaagccgccaaagcctatgcaatcgaactgcgcgaccaggcgctggccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatcc > 1:356923‑M1/149‑150 (MQ=255) ctgggcctggaagccgccaaagcctatgcaatcgaactgcgcgaccaggcgctggccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatCCCt < 1:156273‑M1/4‑1 (MQ=255) gcctggaagccgccaaagcctatgcaatcgaactgcgcgaccaggcgctggccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAg > 2:107944‑M1/143‑150 (MQ=255) cAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCgg < 1:537267/150‑1 (MQ=255) cAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCgg < 1:502959/150‑1 (MQ=255) cAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCgg < 1:239284/150‑1 (MQ=255) cAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCgg < 1:600317/150‑1 (MQ=255) cAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCgg < 2:530228/150‑1 (MQ=255) aagccgccaaagcctatgcaatcgaactgcgcgaccaggcgctggccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAGGATCgg > 2:725914‑M1/137‑150 (MQ=255) agccgccaaagcctatgcaatcgaactgcgcgaccaggcgctggccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAGGATCggg > 1:34009‑M1/136‑150 (MQ=255) agccgccaaagcctatgcaatcgaactgcgcgaccaggcgctggccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAGGATCggg < 2:34009‑M1/15‑1 (MQ=255) agccgccaaagcctatgcaatcgaactgcgcgaccaggcgctggccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAGGATCggg > 1:521066‑M1/136‑150 (MQ=255) aaCGGCATGACCGGGCGTTCTCGGGTGATCTCTTGCAACGTAGTGCGAATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCggg < 2:312194/150‑1 (MQ=255) cGTGACCTGGCGTTCGCGATGTATCTCTTGAATCGTCGTGGGCATCAGGTGAGTCGTTATAGGTGTGTGAAGACGAGGCAGGTTGGCCCGTTGTGGGAAAATTGCTCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTGTAc < 2:136514/150‑1 (MQ=255) gggCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGaa > 2:388443/1‑150 (MQ=255) gggCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGaa > 2:574200/1‑150 (MQ=255) aatcgaactgcgcgaccaagcgctggccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAGGATCGGGTTTACCCGCGAATGCGTc < 1:252069‑M1/33‑1 (MQ=255) gATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGGTTACCCGCGAATGCGTCGGCAAAtt > 1:141613/1‑150 (MQ=255) tctTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAg > 2:545236/1‑150 (MQ=255) gAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCg > 1:91289/1‑150 (MQ=255) ggcgctggccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCa > 2:156273‑M1/100‑150 (MQ=255) cgctggccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCAtt > 2:252069‑M1/98‑150 (MQ=255) tcgtGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATAGCATTcg > 1:179061/1‑150 (MQ=255) ttggCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCgg < 2:489896/148‑1 (MQ=255) gccgcactgcaagggttcggcgaaaaggccgagccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCgg > 2:263934‑M1/93‑150 (MQ=255) gccgaactgcaagggttcggcgaaaaggccgagcagctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcgcctatCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCgg > 2:245102‑M1/93‑150 (MQ=255) tCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAAc < 2:91289/150‑1 (MQ=255) tCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAAc < 1:45592/150‑1 (MQ=255) cAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAAcc < 1:545236/150‑1 (MQ=255) gCGAGTCGTTATCGGTGTGTGGCGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCCGCAGGATAGGCCTTCCACCAATCCGCCTCGCCGAATTCGATATCGTACTCGCGAGTAAACCCGa < 2:141613/150‑1 (MQ=255) gCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGa < 2:448408/150‑1 (MQ=255) gTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACa > 1:732136/1‑150 (MQ=255) gTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACa < 2:657066/150‑1 (MQ=255) gTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATGGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATACtccg < 1:29943/150‑4 (MQ=255) ttATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGa > 1:779108/1‑120 (MQ=255) ttATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGa < 2:779108/120‑1 (MQ=255) ttATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATAGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACACTATCCTACAg > 1:411015/1‑150 (MQ=255) gccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCgg > 2:499115‑M1/61‑118 (MQ=255) gccgctgcgggccttggcgcgttatattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCgg < 1:499115‑M1/58‑1 (MQ=255) aCGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGt > 1:375976/1‑150 (MQ=255) gcgtctgTTTACTCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGttt < 2:732136/144‑1 (MQ=255) gcgGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGTATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGttt > 2:69894/1‑150 (MQ=255) cgGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTa < 2:179061/150‑1 (MQ=255) cgGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGACTGTTCGCACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTa < 1:574200/150‑1 (MQ=38) cccATTGTGGGAAAAGTGCTCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGtt > 1:72250/1‑150 (MQ=255) cccATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCgg < 1:285491/102‑1 (MQ=255) cccATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCgg > 2:285491/1‑102 (MQ=255) ccATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTc > 1:685681/1‑150 (MQ=255) cATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCg > 1:821152/1‑150 (MQ=255) aTTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGa < 2:375976/150‑1 (MQ=255) ttGTGGGATAAGTGCGCATTCGTCCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCTATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGAc < 2:411015/150‑1 (MQ=255) tattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCAtt < 2:109731‑M1/53‑1 (MQ=255) tattgtcgaacgccgtaactaaacagcttcacctatCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCAtt > 1:109731‑M1/37‑89 (MQ=255) cATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGaa > 2:342727/1‑111 (MQ=255) cATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGaa < 1:342727/111‑1 (MQ=255) cacaGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAg > 1:571885/1‑150 (MQ=255) cacaGGTTACGCGGCCCCCTGTAGGATCCGGATTACCCGCGAATGCGTCGGCAAATTCAAGATCGAATGCGCGGGTAAAGCCGATCCTACAGGGATAGGTGAAGATGGTCCTTTACGGCTTTCGACAATATAACGCGCCAACGCCCGCAg > 2:751837/1‑150 (MQ=37) gTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACa < 1:315949/86‑1 (MQ=255) gTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACa > 2:315949/1‑86 (MQ=255) gTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAg > 1:237122/1‑93 (MQ=255) gTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAg < 2:237122/93‑1 (MQ=255) | CAGCGCGGTCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAG > NC_002947/614121‑614403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |