New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1385152	17 (0.540)	4 (0.140)	4/222	NT	19.9%	intergenic (‑116/+45)	proS/oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
	?	NC_002947	= 1385158	17 (0.600)					intergenic (‑122/+39)	proS/oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD

AGGGGTTTCTTTCTGGGTGGCGAGCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1384992‑1385152 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaaaagcccggcAATCACGCCGGGCTTTTTCTTGGCTGACAAGTGTCACGCCCTGGGGCATCCTGTACGCCTTCGTTTCCCCCCCGTACAATGCGGGGCTATTTCAACGTCTTAGGCAATCGACACGGCTAACCATGCGCACCAGTCAATATTT  <  NC_002947/1385158‑1385017                                                                                                                                                                                                                                                                                                                 AGGGGTTTCTTTCTGGGTGGCGAGCAAATATTGCCTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGA                                                                                                                                                           <  1:710884/150‑1       TTCTTTCTGGGTGGCGAGCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGC                                                                                                                                                     >  1:91244/1‑150                                          GCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCAATC                                                                                                                                            <  1:393002/124‑1                                          GCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCAATC                                                                                                                                            >  2:393002/1‑124                                                                                                                                   GTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCTTGGCTGACAAGTGTCACGCCCTGGGGCATCCTGTACGCCTTCGTTTCCCCCCCGTACAATGCGGGGCTATTTCAACGTCTT                                           <  1:95397/132‑1                                                                                                                                   GTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCTTGGCTGACAAGTGTCACGCCCTGGGGCATCCTGTACGCCTTCGTTTCCCCCCCGTACAATGCGGGGCTATTTCAACGTCTT                                           >  2:95397/1‑132                                                                                                                                     GACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCTTGGCTGACAAGTGTCACGCCCTGGGGCATCCTGTACGCCTTCGT                                                                                <  1:346861/93‑1                                                                                                                                     GACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCTTGGCTGACAAGTGTCACGCCCTGGGGCATCCTGTACGCCTTCGT                                                                                >  2:346861/1‑93                                                                                                                                                      AAAAAGCCCGGCAATCACGCCGGGCTTTTTCTTGGCTGACAAGTGTCACGCCCTGGGGCATCCTGTACGCCTTCGTTTCCCCCCCGTACAATGCGGGGCTATTTCAACGTCTTAGGCAATCGACACGGCTAACCATGCGCACCAGTCAAT      <  2:266419/150‑1                                                                                                                                                          AGCCCGGCAATCACGCCGGGCTTTTTCTTGGCTGACAAGTGTCACGCCCTGGGGCATCCTGTACGCCTTCGTTTCCCCCCCGTACAATGCGGGGCTATTTCAACGTCTTAGGCAATCGACACGGCTAACCATGCGCACCAGTCAATATTT  >  2:91244/1‑150                                                                                                                                                                                                                                                                                                                 AGGGGTTTCTTTCTGGGTGGCGAGCAAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1384992‑1385152 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaaaagcccggcAATCACGCCGGGCTTTTTCTTGGCTGACAAGTGTCACGCCCTGGGGCATCCTGTACGCCTTCGTTTCCCCCCCGTACAATGCGGGGCTATTTCAACGTCTTAGGCAATCGACACGGCTAACCATGCGCACCAGTCAATATTT  <  NC_002947/1385158‑1385017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.