New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1385152	17 (0.540)	4 (0.140)	4/222	NT	19.9%	intergenic (‑116/+45)	proS/oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD
	?	NC_002947	= 1385158	17 (0.600)					intergenic (‑122/+39)	proS/oprD	proline‑‑tRNA ligase/basic amino acid specific porin OprD

AAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGCCTGACGCA  >  NC_002947/1385017‑1385297                                                                                                                                        |                                                                                                                                                  aaaTATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTgccgggct                                                                                                                                     >  2:91244‑M2/1‑142 (MQ=255)     atTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTgccgggcttttt                                                                                                                                 <  2:266419‑M2/150‑13 (MQ=255)         aCTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAgg                                                                                                                             >  1:720533/1‑150 (MQ=255)                 gcATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCaatc                                                                                                                                               >  2:393002‑M1/1‑120 (MQ=255)                 gcATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCaatc                                                                                                                                               <  1:393002‑M1/124‑5 (MQ=255)                           ccGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGcc                                                                                                           >  2:99017/1‑150 (MQ=255)                                       ccTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGa                                                                                               >  1:202152/1‑150 (MQ=255)                                          aaGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCAATCACgccgggctttttcttggctgacaagtgtcac                                                                                                              >  2:95397‑M2/1‑101 (MQ=255)                                          aaGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCAATCACgccgggctttttcttggctgacaagtgtcac                                                                                                              <  1:95397‑M2/132‑32 (MQ=255)                                                   aaaTAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGt                                                                                   <  1:99017/150‑1 (MQ=255)                                                                      gggggggAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAg                                                                >  1:273175/1‑150 (MQ=255)                                                                           ggAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTtcgt                                                           >  2:143218/1‑150 (MQ=255)                                                                            gAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTtcgtc                                                          <  1:266419/150‑1 (MQ=255)                                                                               aCGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCAATCACgccgggctttttcttggctgacaagtgtc                                                                                                                <  1:346861‑M2/93‑30 (MQ=255)                                                                               aCGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCAATCACgccgggctttttcttggctgacaagtgtc                                                                                                                >  2:346861‑M2/1‑64 (MQ=255)                                                                                cGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGtcgatc                                                      <  1:5931/150‑1 (MQ=255)                                                                                     gCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATgg                                                 <  2:202152/150‑1 (MQ=255)                                                                                          cAGGATGCCCCAGGGCGTGACACTTGTCCGCCAGGAAAAAGCCCGGTGTGGTTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCGCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAAt                                            <  2:278251/150‑1 (MQ=255)                                                                                              aTGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCgta                                        <  2:720533/150‑1 (MQ=255)                                                                                                gCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCgtagt                                      <  1:143218/150‑1 (MQ=255)                                                                                                          gTGACACTTGTCAGCCAAGAAAAAGCCCGGCgtgattgccgggctttttcttggctgacaagtgtcacgccctggggcatcctgtacgccttcgtttcccccccgtacaatgcggggctatttcaacgtctt                                              <  1:95397‑M1/132‑102 (MQ=255)                                                                                                          gTGACACTTGTCAGCCAAGAAAAAGCCCGGCgtgattgccgggctttttcttggctgacaagtgtcacgccctggggcatcctgtacgccttcgtttcccccccgtacaatgcggggctatttcaacgtctt                                              >  2:95397‑M1/1‑31 (MQ=255)                                                                                                            gACACTTGTCAGCCAAGAAAAAGCCCGGCgtgattgccgggctttttcttggctgacaagtgtcacgccctggggcatcctgtacgccttcgt                                                                                   >  2:346861‑M1/1‑29 (MQ=255)                                                                                                            gACACTTGTCAGCCAAGAAAAAGCCCGGCgtgattgccgggctttttcttggctgacaagtgtcacgccctggggcatcctgtacgccttcgt                                                                                   <  1:346861‑M1/93‑65 (MQ=255)                                                                                                                 ttGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCa                                                                 >  2:841612/1‑106 (MQ=255)                                                                                                                 ttGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCa                                                                 <  1:841612/106‑1 (MQ=255)                                                                                                                             aaaaaGCCCGGCaatcacgccgggctttttcttggctgacaagtgtcacgccctggggcatcctgtacgccttcgtttcccccccgtacaatgcggggctatttcaacgtcttaggcaatcgacacggctaaccatgcgcaccagtcaat         <  2:266419‑M1/150‑139 (MQ=255)                                                                                                                             aaaaaGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGcc         <  2:273175/150‑1 (MQ=255)                                                                                                                                 aGCCCGGCaatcacgccgggctttttcttggctgacaagtgtcacgccctggggcatcctgtacgccttcgtttcccccccgtacaatgcggggctatttcaacgtcttaggcaatcgacacggctaaccatgcgcaccagtcaatattt     >  2:91244‑M1/1‑8 (MQ=255)                                                                                                                                 aGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGCCTGac     >  2:647615/1‑150 (MQ=255)                                                                                                                                 aGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGCCTGac     <  1:647615/150‑1 (MQ=255)                                                                                                                                    ccGGCGTGATTGCCGGGCTTTTTCACGTGCGCCCGACTAAAACAGAAAGTGATGGGATGCTCAGCGGGTACTGGACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACCACATCGTAAGAACGGTAGGTGGCCTGacgca  >  1:574932/1‑150 (MQ=255)                                                                                                                                        |                                                                                                                                                  AAATATTGACTGGTGCGCATGGTTAGCCGTGTCGATTGCCTAAGACGTTGAAATAGCCCCGCATTGTACGGGGGGGAAACGAAGGCGTACAGGATGCCCCAGGGCGTGACACTTGTCAGCCAAGAAAAAGCCCGGCGTGATTGCCGGGCTTTTTCAGGTGCGGGGCACTGCAAGCCAGGCTTACAGGATGCTCAGCGGGTACTCCACGATCAGGCGCAGTTCGTCGATCGATGGGGAATCGTAGTAGACACCATCGGAAGAACGGTAGGTGGCCTGACGCA  >  NC_002947/1385017‑1385297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.