New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1570468	27 (0.850)	9 (0.360)	7/196	NT	28.9%	intergenic (+34/‑154)	pcaF‑I/pcaT	beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
	?	NC_002947	= 1570494	23 (0.920)					intergenic (+60/‑128)	pcaF‑I/pcaT	beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease

CCACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1570296‑1570468 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcggggaagcccgctccCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCTCCAGCT  <  NC_002947/1570494‑1570346                                                                                                                                                                                                                                                                                                                                    CCACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGC                                                                                                                                                                              >  2:517783/1‑150 CCACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGC                                                                                                                                                                              >  1:546608/1‑150      CCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTCGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTT                                                                                                                                                                         <  1:747708/150‑1       CCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGC                                                                                                                                                                              >  2:443328/1‑144       CCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGC                                                                                                                                                                              <  1:443328/144‑1            GCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGG                                                                                                                                                                   <  1:191245/150‑1               TGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAA                                                                                                                                                                <  1:517783/150‑1                    GGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCG                                                                                                                                                           <  2:300614/150‑1                       GCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTC                                                                                                                                                        >  1:553595/1‑150                        CACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGG                                                                                                                                                                   >  1:476105/1‑138                        CACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGG                                                                                                                                                                   <  2:476105/138‑1                                                 CCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGT                                                                                                                              <  2:489698/150‑1                                                  CAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTT                                                                                                                             <  2:553595/150‑1                                                         AGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGG                                                                                                                      <  1:305903/150‑1                                                         AGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGG                                                                                                                      <  2:546608/150‑1                                                              AGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTC                                                                                                                 <  1:498072/150‑1                                                                                         ATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTT                                                                                                                             >  2:106517/1‑111                                                                                         ATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTT                                                                                                                             <  1:106517/111‑1                                                                                                                          GCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTG                                                                                                                            >  1:549724/1‑79                                                                                                                          GCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTG                                                                                                                            <  2:549724/79‑1                                                                                                                                                              CGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCAAGGGCCTGGCGACCat                 <  1:569885/150‑3                                                                                                                                                                     GCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCA                                <  2:281195/128‑1                                                                                                                                                                     GCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCA                                >  1:281195/1‑128                                                                                                                                                                       CCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCT        >  1:361637/1‑150                                                                                                                                                                         GCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCTCC      >  2:580348/1‑150                                                                                                                                                                             CCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCTCCAGCT  >  1:718407/1‑150                                                                                                                                                                             CCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGC                                  <  1:75143/118‑1                                                                                                                                                                             CCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGC                                  >  2:75143/1‑118                                                                                                                                                                                                                                                                                                                                    CCACCCCCTGGGCATGAGCGGTGCACGCCTGGTACTGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1570296‑1570468 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcggggaagcccgctccCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCGGTACAGGTCAAACCCGCTCGATGGCCAACGCCAGACCTTGGCCGACACCCACACACATGGTCGCCAGGCCCTTGCGACCGCCACTCTTCTCCAGCT  <  NC_002947/1570494‑1570346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.