| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1570468 | 27 (0.850) | 9 (0.360) | 7/196 | NT | 28.9% | intergenic (+34/‑154) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease |
| ? | NC_002947 | = 1570494 | 23 (0.920) | intergenic (+60/‑128) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease | |||||
AGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACC > NC_002947/1570346‑1570642 | aGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGg > 1:718407‑M2/1‑149 (MQ=255) ggAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGggagc > 2:580348‑M2/1‑145 (MQ=255) agaagaGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGggagcgg > 1:361637‑M2/1‑143 (MQ=255) atggtcGCCAGGCCCTTGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGggagcgggcttccccg < 1:569885‑M2/148‑17 (MQ=255) tGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGggagcgggc > 1:281195‑M2/1‑119 (MQ=255) tGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGggagcgggc < 2:281195‑M2/128‑10 (MQ=255) gCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGg > 2:75143‑M2/1‑117 (MQ=255) gCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGg < 1:75143‑M2/118‑2 (MQ=255) gtgtgGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGCGACATaa < 2:638194/150‑1 (MQ=255) tgGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGc < 2:125377/150‑1 (MQ=255) gCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCa < 1:705070/150‑1 (MQ=255) ccAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCACGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAg > 2:420045/1‑150 (MQ=255) ggTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCg > 2:680221/1‑150 (MQ=255) tCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCct < 1:118775/115‑1 (MQ=255) tCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCct > 2:118775/1‑115 (MQ=255) gCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCg < 1:476801/150‑1 (MQ=255) cATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAgt > 1:380683/1‑150 (MQ=255) aTCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGc > 2:227271/1‑140 (MQ=255) aTCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGc < 1:227271/140‑1 (MQ=255) cGGGTTTGACCTGTACCGGCCTCTTCGCGCGGAAGCCCGCTCCAACAGAGATCCACGCACTCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTAc > 2:153177/1‑150 (MQ=255) aCCTGTACCGGCCTCTTCGCGGGGCAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATg > 1:839265/1‑150 (MQ=255) ccTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGt < 1:420045/150‑1 (MQ=255) cTGTACCGGCCTCTTCGCGGGGAAGCCCGCGCCAACAGGGGTCCACGCAATCAGCTGTGGGCGCGGGCTGCCCCCCGAAGAGGGCTATCGTGTAAGAGACTGGGCACGTTTCAATCCCAGTGCCGGAACGACGGTGGTACTAGGTATGTc > 2:239754/1‑150 (MQ=255) gAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggccaacgccagaccttggccgacacccacacacatggtcgccaggcccttgcgaccgccact < 1:498072‑M2/150‑113 (MQ=255) cccGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGt < 2:850369/124‑1 (MQ=255) cccGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGt > 1:850369/1‑124 (MQ=255) cccGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGa < 1:296404/150‑1 (MQ=255) cccGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGa > 1:803957/1‑150 (MQ=255) ccGCTCCAACAGGGATCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggccaacgccagaccttggccgacacccacacacatggtcgccaggcccttgcgaccgccactcttct < 1:305903‑M2/150‑118 (MQ=255) ccGCTCCAACAGGGATCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggccaacgccagaccttggccgacacccacacacatggtcgccaggcccttgcgaccgccactcttct < 2:546608‑M2/150‑118 (MQ=255) cTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTaa > 2:569631/1‑150 (MQ=255) cAACAGGGATCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggc < 2:549724‑M2/79‑53 (MQ=255) cAACAGGGATCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggc > 1:549724‑M2/1‑27 (MQ=255) aaCAGGGATCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggccaacgccagaccttggccgacacccacacacatggtcgccaggcccttgcgaccgccactcttctccagctg < 2:553595‑M2/150‑125 (MQ=255) aaCAGGGATCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggccaacgccagaccttggccgacacccacacacat > 2:106517‑M2/1‑26 (MQ=255) aaCAGGGATCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggccaacgccagaccttggccgacacccacacacat < 1:106517‑M2/111‑86 (MQ=255) aaCAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAAccc < 2:839265/150‑1 (MQ=255) aCAGGGATCCACGCAATCACCTGTGggagcgggcttccccgcgaagaggccggtacaggtcaaacccgctcgatggccaacgccagaccttggccgacacccacacacatggtcgccaggcccttgcgaccgccactcttctccagctgg < 2:489698‑M2/150‑126 (MQ=255) cGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTa > 2:337466/1‑97 (MQ=255) cGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTa < 1:337466/97‑1 (MQ=255) tCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCGCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCNANAACTACNTAGGACCCTCCANGAGTAAACCCGTCATGACCTCAACNTa < 1:453275/150‑1 (MQ=255) aCCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTAtt > 1:841054/1‑150 (MQ=255) tgGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACAcc > 1:698731/1‑150 (MQ=255) | AGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACAGGGATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACC > NC_002947/1570346‑1570642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |