New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1731232 | 13 (0.410) | 4 (0.160) | 4/192 | NT | 25.8% | intergenic (‑103/+88) | dapE/PP_1526 | succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase |
? | NC_002947 | = 1731268 | 13 (0.530) | intergenic (‑139/+52) | dapE/PP_1526 | succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase |
AGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1731080‑1731232 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcacgcccgctcccacCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGTGCTGCCCGAAACCATTTGATATAAGATAACGCCCCTCAGATTTCCCCGCCTTGCCTTGCCCCGGAG < NC_002947/1731268‑1731136 AGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCGTGCCCGCgaa < 1:368749/150‑4 GGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCG > 1:60199/1‑117 GGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCG < 2:60199/117‑1 GCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCA < 1:658908/104‑1 GCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCA > 2:658908/1‑104 GCCGTGACGGGGGGCTCCGGGTCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCGGTG < 2:834220/150‑1 GTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGG < 1:501146/148‑1 GTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGG > 2:501146/1‑148 GTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTAATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGA < 1:346894/150‑1 GGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGGGCGGGCGTGCCCGCGAATGGGCCGTGCTGCCCGAAACCATTTGATATAAGATAACGCCCCTCAGATTTCCCCGCCTTGCCTTGCCCCGGA < 2:201496/150‑1 GGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGTGCTGCCCGAAACCATTTGATATAAGATAACGCCCCTCAGATTTCCCCGCCTTGCCTTGCCCCGGAG > 1:569948/1‑150 AGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1731080‑1731232 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcacgcccgctcccacCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGTGCTGCCCGAAACCATTTGATATAAGATAACGCCCCTCAGATTTCCCCGCCTTGCCTTGCCCCGGAG < NC_002947/1731268‑1731136 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |