New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1731232	13 (0.410)	4 (0.160)	4/192	NT	25.8%	intergenic (‑103/+88)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1731268	13 (0.530)					intergenic (‑139/+52)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase

GCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGC  >  NC_002947/1731085‑1731379                                                                                                                                                    |                                                                                                                                                    gCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAg                                                                                                                                                   >  2:569948/1‑150 (MQ=255) gCAGGCCAGTTGAAGGGTAGGCGAGAGCGCGGCAGGGGCCGTCATGGGGTATTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAg                                                                                                                                                   <  1:248786/150‑1 (MQ=255)  cAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAgg                                                                                                                                                  <  1:376728/150‑1 (MQ=255)               gggTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGctc                                                                                                                                     >  2:39950/1‑150 (MQ=255)                     gCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACg                                                                                                                               >  1:385475/1‑150 (MQ=255)                      cGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGc                                                                                                                              <  1:350553/150‑1 (MQ=255)                          aggtCGGCAGGGGCCGTGATGGGGGACTGCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTCATATCAAATGGTTTCGGGCAGTGTGGCCCATTCGCGGGCACGACCGCTCCCACAGGTACTGCACAGCGCTGAACGCCtgt                                                                                                                          <  2:356382/147‑1 (MQ=255)                          agCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCtgt                                                                                                                          <  1:39950/150‑1 (MQ=255)                            cTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGc                                                                                                                        >  1:609477/1‑150 (MQ=255)                                      gCCGTGACGGGGGGCTCCGGGTCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACcggcttggcacaggcgttcagagctgtgcagtaccggtg                                                                                                              <  2:834220‑M1/150‑40 (MQ=255)                                         gTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACcggcttggcacaggcgttcagagctgtgcagtacctgtgg                                                                                                             <  1:501146‑M1/148‑41 (MQ=255)                                         gTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACcggcttggcacaggcgttcagagctgtgcagtacctgtgg                                                                                                             >  2:501146‑M1/1‑108 (MQ=255)                                         gTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTAATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACcggcttggcacaggcgttcagagctgtgcagtacctgtggga                                                                                                           <  1:346894‑M1/150‑43 (MQ=255)                                                    cTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgcc                                                                                                >  1:569948‑M2/1‑133 (MQ=255)                                                     tCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCCCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgccc                                                                                               <  2:201496‑M2/150‑19 (MQ=255)                                                                              tCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGccc                                                                      >  1:314839/1‑150 (MQ=255)                                                                                tGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTACACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAg                                                                    >  1:122098/1‑150 (MQ=255)                                                                                              ttATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCCGGCCAATTCAAGCct                                                      >  2:687516/1‑150 (MQ=255)                                                                                                     aaaTGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTgcgc                                               >  2:282263/1‑150 (MQ=255)                                                                                                         ggTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTgg                                           <  1:282263/150‑1 (MQ=255)                                                                                                                    gcaCGGCCGATGCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGGCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTc                                <  2:68339/150‑1 (MQ=255)                                                                                                                     caCGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCt                               <  2:385475/150‑1 (MQ=255)                                                                                                                                   gggCACGCCCGCTCCCACcggcttggcacaggcgttcagagctgtgcagtacctgtgggggcgggcgtgcccgcgaatgggccgtgctgcccgaaaccatttgatataagataacgcccctcagatttccccgccttgccttgccccgga                 <  2:201496‑M1/150‑133 (MQ=255)                                                                                                                                    ggCACGCCCGCTCCCACcggcttggcacaggcgttcagagctgtgcagtacctgtgggagcgggcgtgcccgcgaatgggccgtgctgcccgaaaccatttgatataagataacgcccctcagatttccccgccttgccttgccccggag                >  1:569948‑M1/1‑17 (MQ=255)                                                                                                                                               tCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgcccgcgaatgggccgtgctgcccgaaaccatttgatattagataacgcccctcagatttccccgccttgccttgccccggagtcccccatgac     <  1:346894‑M2/150‑109 (MQ=255)                                                                                                                                                 ccACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgcccgcgaatgggccgtgctgcccgaaaccatttgatataagataacgcccctcagatttccccgccttgccttgccccggagtcccccatgac     >  2:501146‑M2/1‑40 (MQ=255)                                                                                                                                                 ccACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgcccgcgaatgggccgtgctgcccgaaaccatttgatataagataacgcccctcagatttccccgccttgccttgccccggagtcccccatgac     <  1:501146‑M2/148‑109 (MQ=255)                                                                                                                                                  caccGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgcccgcgaatgggccgtgctgcccgaaaccatttgatataagataacgcccctcagatttccccgccttgccttgacccggagccccccgtcacggc  <  2:834220‑M2/150‑112 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGC  >  NC_002947/1731085‑1731379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.