New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 267593741 (1.290)7 (0.230) 6/236 NT 15.2% coding (241/1080 nt) PP_2344 hypothetical protein
?NC_002947 = 2675942 39 (1.290)coding (236/1080 nt) PP_2344 hypothetical protein

AGCAGCTGGCCGTCGCGGCCCTCCAGCAGGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2675783‑2675937
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgctTCGCC‑AGCGCCTGCCTCGACGACCCGGTCGCCGGCATCCGTCGCCTGGGCGAGCTATACACCGAGCAGGATTTCGCCAAGGGCGTCACCCCGGCCGAAATCAGCCGCAGCTGCCAACGCATGCTCGATGACCTGCTGGAGGGCCGCGAC  <  NC_002947/2675942‑2675794
                                                                                                                                                                                                                                                                                                                 
AGCAGCTGGCCGTCGCGGCCCTCCAGCAGGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAG                                                                                                                                                             <  1:19050/150‑1
 GCAGCTGGCCGTCGCGGCCCTCCAGCAGGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGACGCAGG                                                                                                                                                            <  2:806823/150‑1
  CAGCTGGCCGTCGCGGCCCTCCAGCAGGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGC                                                                                                                                                           <  1:512754/150‑1
     CTGGCCGTCGCGGCCCTCCAGCAGGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT                                                                                                                                                        >  2:388340/1‑150
                    CTCCAGCAGGTCATCGAGCATGTGTTGGCAGCTGCGGGTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCTTCGCC‑AGCGCCTGCC                                                                                                                                        <  2:15888/150‑1
                             GTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCTTCGCC‑AGCGCCT                                                                                                                                           >  1:351206/1‑138
                             GTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCTTCGCC‑AGCGCCT                                                                                                                                           <  2:351206/138‑1
                                                                                CTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCTTCGCC‑AGCGCCTGCCTCGA                                                                                                                                    >  1:273727/1‑94
                                                                                                              GCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCTTCGCC‑AGCGCCT                                                                                                                                           >  1:308504/1‑57
                                                                                                              GCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCTTCGCC‑AGCGCCT                                                                                                                                           <  2:308504/57‑1
                                                                                                                                             TCGAGGCAGGCGC‑TGGCGAAGCGCCTGCCTCGACGACCCGGTCGCCGGCATCCGTCGCCTGGGCGAGCTATACACCGAGCAGGATTTCGCCAAG                                                                       >  2:273727/1‑94
                                                                                                                                                      GCGCTTCGCC‑AGCGCCTGCCTCGACGACCCGGTCGCCGGCATCCGTCGCCTGGGCGAGCTATACACCGAGCAGGATTTCGCCAAGGGCGTCACCCCGGCCGAAATCAGCCGCAGCTGCCAACGCATGCTCGATGACCTGCTGGAGGGCCG      >  2:500571/1‑150
                                                                                                                                                          TTCGCC‑AGCGCCTGCCTCGACGACCCGGTCGCCGGCATCCGTCGCCTGGGCGAGCTATACACCGAGCAGGATTTCGCCAAGGGCGTCACCCCGGCCGAAATCAGCCGCAGCTGCCAACGCATGCTCGATGACCTGCTGGAGGGCCGCGAC  >  1:482041/1‑150
                                                                                                                                                          TTCGCC‑AGCGCCTGCCTCGACGACCCGGTCGCCGGCATCCGTCGCCTGGGCGAGCTATACACCGAGCAGGATTTCGCCAAGGGCGTCACCCCGGCCGAAATCAGCCGCAGCTGCCAACGCATGCTCGA                        <  1:772689/128‑1
                                                                                                                                                          TTCGCC‑AGCGCCTGCCTCGACGACCCGGTCGCCGGCATCCGTCGCCTGGGCGAGCTATACACCGAGCAGGATTTCGCCAAGGGCGTCACCCCGGCCGAAATCAGCCGCAGCTGCCAACGCATGCTCGA                        >  2:772689/1‑128
                                                                                                                                                                                                                                                                                                                 
AGCAGCTGGCCGTCGCGGCCCTCCAGCAGGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2675783‑2675937
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgctTCGCC‑AGCGCCTGCCTCGACGACCCGGTCGCCGGCATCCGTCGCCTGGGCGAGCTATACACCGAGCAGGATTTCGCCAAGGGCGTCACCCCGGCCGAAATCAGCCGCAGCTGCCAACGCATGCTCGATGACCTGCTGGAGGGCCGCGAC  <  NC_002947/2675942‑2675794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.