New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2675937	41 (1.290)	7 (0.230)	6/236	NT	15.2%	coding (241/1080 nt)	PP_2344	hypothetical protein
	?	NC_002947	= 2675942	39 (1.290)					coding (236/1080 nt)	PP_2344	hypothetical protein

GTCGCGGCCCTCCAGCAGGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGCCCACCCGCCGCGCCCGGCAATACCCCGACATCGGCCGC  >  NC_002947/2675794‑2676090                                                                                                                                                      |                                                                                                                                                     gTCGCGGCCCTCCAGCAGGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAa                                                                                                                                                     >  1:482041‑M2/1‑149 (MQ=255)     cgGCCCTCCAGCAGGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAagcgc                                                                                                                                                 >  2:500571‑M2/1‑145 (MQ=255)       gCCCTCCAGCAGGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCa                                                                                                                                               <  2:848356/150‑1 (MQ=255)        cccTCCAGCAGGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGTCCTGGGTGCCGCCCTTAGCGAAATCCTCCTCGGTGTATACCTCCCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAg                                                                                                                                              <  2:98911/150‑1 (MQ=255)              agcagGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTGGCCCAGGCGACGGATGCCGGCGACCGGGTCTTCGAGGCAGGCGCT‑GGCGAACCGCCAGGCACcg                                                                                                                                        >  1:176096/1‑150 (MQ=255)                  ggTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACcgatcg                                                                                                                                    >  2:624343/1‑150 (MQ=255)                      aTCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATgc                                                                                                                                >  1:161014/1‑150 (MQ=255)                      aTCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATgc                                                                                                                                >  2:372964/1‑150 (MQ=255)                      aTCGAGCATGCGTTGGAAGCTCCAGCTGCAATCGGACGGGGAGACGAACTGAACGAAATTTTTCGATGTGGGGAGCTCGTCCAGGCTACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATgc                                                                                                                                >  2:98386/1‑150 (MQ=255)                       tCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAa                                                                                                                                                     <  1:772689‑M2/128‑2 (MQ=255)                       tCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAa                                                                                                                                                     >  2:772689‑M2/1‑127 (MQ=255)                        cGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGCATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATgcgc                                                                                                                              <  2:831347/150‑1 (MQ=255)                         gAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGACAGACACCGATCGATGCGcc                                                                                                                             >  1:116143/1‑150 (MQ=255)                                    ggCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCAc                                                                                                                  <  1:659775/150‑1 (MQ=255)                                       aGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCt                                                                                                               >  2:292151/1‑150 (MQ=255)                                                tGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTg                                                                                                      >  2:223057/1‑150 (MQ=255)                                                    ttCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGGCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGa                                                                                                  <  2:666777/150‑1 (MQ=255)                                                         ccGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTa                                                                                             <  1:449096/150‑1 (MQ=255)                                                         ccGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTa                                                                                             >  1:702548/1‑150 (MQ=255)                                                           ggggTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGc                                                                                           <  1:372964/150‑1 (MQ=255)                                                                  cGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGc                                                                                    <  1:147110/150‑1 (MQ=255)                                                                  cGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGc                                                                                    >  1:215461/1‑150 (MQ=255)                                                                      cTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCTTCGCCAgcgcctgcctcga                                                                                                                                         >  2:273727‑M2/1‑81 (MQ=255)                                                                          gCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAgc                                                                            <  2:410770/150‑1 (MQ=255)                                                                                      gcGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAgg                                                                >  1:704008/2‑150 (MQ=255)                                                                                            tataGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTgg                                                          <  2:407030/150‑1 (MQ=255)                                                                                              taGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGAt                                                        <  2:233232/150‑1 (MQ=255)                                                                                              taGCCCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGAt                                                        <  2:176096/150‑1 (MQ=255)                                                                                                gCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTGGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGc                                                      >  2:374728/1‑150 (MQ=255)                                                                                                gCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGc                                                      <  1:704002/150‑1 (MQ=255)                                                                                                  tCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGccc                                                    <  1:223057/150‑1 (MQ=255)                                                                                                          gCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCtt                                            >  1:508658/1‑150 (MQ=255)                                                                                                            gACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCTGCGGCTTTg                                          >  2:775163/1‑150 (MQ=255)                                                                                                               ggATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGcc                                       >  2:23666/1‑150 (MQ=255)                                                                                                               ggATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGcc                                       <  2:161014/150‑1 (MQ=255)                                                                                                                gATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGccc                                      >  1:343535/1‑150 (MQ=255)                                                                                                                      ggCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGCCCagggca                                <  2:810972/150‑6 (MQ=255)                                                                                                                      ggCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGCCCACccgc                                <  1:388340/150‑1 (MQ=255)                                                                                                                      ggCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGACAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGCCCACccgc                                >  2:105274/1‑150 (MQ=255)                                                                                                                       gCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGCCCACccgcc                               <  2:704008/150‑1 (MQ=255)                                                                                                                           ccGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGGCGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAg                                                                 >  1:798964/1‑112 (MQ=255)                                                                                                                           ccGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGGCGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAg                                                                 <  2:798964/112‑1 (MQ=255)                                                                                                                            cGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGCCCACCCGCCGCGcc                          >  1:657407/1‑150 (MQ=255)                                                                                                                               gtcgtcGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGCCCACCCGCCGCGCCCgg                       <  2:215461/150‑1 (MQ=255)                                                                                                                                   tcgAGGCAGGCGCT‑GGCGAagcgcctgcctcgacgacccggtcgccggcatccgtcgcctgggcgagctatacaccgagcaggatttcgccaag                                                                           >  1:273727‑M2/1‑19 (MQ=255)                                                                                                                                   tcgAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGCCCACCCGCCGCGCCCGGCAAt                   >  2:790594/1‑150 (MQ=255)                                                                                                                                      aggcaggcGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGCCCACCCGCCGCGCCCGGCAATAcc                <  2:657407/150‑1 (MQ=255)                                                                                                                                       ggcaggcGCT‑GGCGAagcgcctgcctcgacgacccggtcgccggcatccgtcgcctgggcgagctatacaccgagcaggatttcgccaagggcgtcaccccggccgaaatcacccgcagctgccaacacatgctcgatgacctgctggag               <  2:15888‑M2/150‑136 (MQ=255)                                                                                                                                          aggcGCT‑GGCGAagcgcctgcctcgacgacccggtcgccggcatccgtcgcctgggcgagctatacaccgagcaggatttcgccaagggcgtcaccccggccgaaatcagccgcagctgccaacgcatgctcgatgac                        >  1:351206‑M2/1‑12 (MQ=255)                                                                                                                                          aggcGCT‑GGCGAagcgcctgcctcgacgacccggtcgccggcatccgtcgcctgggcgagctatacaccgagcaggatttcgccaagggcgtcaccccggccgaaatcagccgcagctgccaacgcatgctcgatgac                        <  2:351206‑M2/138‑127 (MQ=255)                                                                                                                                          aggcGCT‑GGCGAagcgcctgcctcgacgacccggtcgccggcatccgtcgcctgggc                                                                                                         <  2:308504‑M2/57‑46 (MQ=255)                                                                                                                                          aggcGCT‑GGCGAagcgcctgcctcgacgacccggtcgccggcatccgtcgcctgggc                                                                                                         >  1:308504‑M2/1‑12 (MQ=255)                                                                                                                                                     gAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGCCCACCCGCCGCGCCCGGCAATACCCCGACATCGgccgc  >  1:578957/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GTCGCGGCCCTCCAGCAGGTCATCGAGCATGCGTTGGCAGCTGCGGCTGATTTCGGCCGGGGTGACGCCCTTGGCGAAATCCTGCTCGGTGTATAGCTCGCCCAGGCGACGGATGCCGGCGACCGGGTCGTCGAGGCAGGCGCT‑GGCGAAGCGCCAGGCACCGATCGATGCGCCGATCAGGGCACGCTGACGGGGTGCCGAGGGTAGCCACTCGCCGAACAGCGCCAGGTCCAGGCCCTGGATGCCCAGCGGCTTTGGCCCACCCGCCGCGCCCGGCAATACCCCGACATCGGCCGC  >  NC_002947/2675794‑2676090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.