New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2719748 =	28 (0.880)	5 (0.170)	5/236	NT	15.7%	coding (51/609 nt)	PP_2379	cytochrome oxidase biogenesis protein
	?	NC_002947	2719779 =	27 (0.900)					coding (82/609 nt)	PP_2379	cytochrome oxidase biogenesis protein

CATGCTGCCGTAAAAGCTCGACAGGGTGCGCACGTTACCTTGCGGGTCTTTGAGGCTGAACTTGCGCCCGAGGATTTCGTTGCTCATGTTCTTGCCGTACTTGAACTCGAGCCCCCGGGCCGGGCTGCAGCCTGCCAGCAGGCCAAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2719898‑2719748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccgGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACGGCAGCATGCCGATGGTCTTCTTCGGCTTCACCCAGT  >  NC_002947/2719779‑2719926                                                                                                                                                                                                                                                                                                             CATGCTGCCGTAAAAGCTCGACAGGGTGCGCACGTTACCTTGCGGGTCTTTGAGGCTGAACTTGCGCCCGAGGATTTCGTTGCTCATGTTCTTGCCGTACTTGAACTCGAGCCCCCGGGCCGGGCTGCAGCCTGCCAGCAGGCCAAGCCC                                                                                                                                                       <  2:319627/150‑1                                                                                                                        CCGGGCTGCAGCCTGCCAGCAGGCCAAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGAC                                                                           <  1:314770/107‑1                                                                                                                        CCGGGCTGCAGCCTGCCAGCAGGCCAAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGAC                                                                           >  2:314770/1‑107                                                                                                                         CGGGCTGCAGCCTGCCAGCAGGCCAAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGG                                                                                                 <  1:125610/84‑1                                                                                                                         CGGGCTGCAGCCTGCCAGCAGGCCAAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGG                                                                                                 >  2:125610/1‑84                                                                                                                              TGCAGCCTGCCAGCAGGCCAAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACGGCAGCATGCCGA                          >  1:179855/1‑150                                                                                                                                                      CGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACAGGAGCAACGAAATCCTCGGGCGCAAGTTCAACCTCCTAATCCCGCAAGGTAACTTGCTCGCCCTGTCGAGCTTTTACGGCAGCATGCCGATGGTCTTCTTCGGCTTCACCCAGT  <  1:319627/150‑1                                                                                                                                                                                                                                                                                                             CATGCTGCCGTAAAAGCTCGACAGGGTGCGCACGTTACCTTGCGGGTCTTTGAGGCTGAACTTGCGCCCGAGGATTTCGTTGCTCATGTTCTTGCCGTACTTGAACTCGAGCCCCCGGGCCGGGCTGCAGCCTGCCAGCAGGCCAAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2719898‑2719748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccgGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACGGCAGCATGCCGATGGTCTTCTTCGGCTTCACCCAGT  >  NC_002947/2719779‑2719926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.