New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2719748 =	28 (0.880)	5 (0.170)	5/236	NT	15.7%	coding (51/609 nt)	PP_2379	cytochrome oxidase biogenesis protein
	?	NC_002947	2719779 =	27 (0.900)					coding (82/609 nt)	PP_2379	cytochrome oxidase biogenesis protein

GACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACGGCAGCATGCCGATGGTCTTCTTCGGCTTCACCCAGTGC  >  NC_002947/2719650‑2719928                                                                                                                                  |                                                                                                                                                      gACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAg                                                                                                                                   >  1:82564/1‑150 (MQ=255) gACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAg                                                                                                                                   <  1:35434/150‑1 (MQ=255)     ggCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACg                                                                                                                               <  2:838280/150‑1 (MQ=255)       cccGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGc                                                                                                                             <  1:48415/150‑1 (MQ=255)             ccGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAAc                                                                                                                       >  1:155530/1‑150 (MQ=255)               gAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACAt                                                                                                                     >  2:624843/1‑150 (MQ=255)                 gggCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGa                                                                                                                   <  1:624843/150‑1 (MQ=255)                 gggCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGa                                                                                                                   <  2:139296/150‑1 (MQ=255)                     cGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGTCTCGAGTTCAAGTACGGCAAGAACATGAGCaa                                                                                                               >  1:730768/1‑150 (MQ=255)                        gtctttgaggctgaacttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCAgcccgg                                                                                                                                                       <  1:314770‑M1/32‑1 (MQ=255)                        gtctttgaggctgaacttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCAgcccgg                                                                                                                                                       >  2:314770‑M1/76‑107 (MQ=255)                          ccTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGaaa                                                                                                          <  1:79409/150‑1 (MQ=255)                                            gTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCa                                                                                        >  2:714025/1‑150 (MQ=255)                                              ttCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGc                                                                                      <  2:155530/150‑1 (MQ=255)                                                 atgaatgaTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTc                                                                                   >  1:718694/1‑150 (MQ=255)                                                           ttttGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGcccggcccgg                                                                                                                                                  >  1:517273/1‑77 (MQ=255)                                                           ttttGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGcccggcccgg                                                                                                                                                  <  2:517273/77‑1 (MQ=255)                                                           ttttGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGc                                                                                                                             <  1:667956/98‑1 (MQ=255)                                                           ttttGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGc                                                                                                                             >  2:667956/1‑98 (MQ=255)                                                                 cccGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTa                                                                   >  1:534398/1‑150 (MQ=255)                                                                             ttGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTGAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCACAGTAACGTGCGCAccc                                                       >  2:590165/1‑150 (MQ=255)                                                                                  gCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCg                                                  <  1:24733/150‑1 (MQ=255)                                                                                    cGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCCCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAg                                                >  1:329457/1‑150 (MQ=255)                                                                                           ggCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCa                                                                                        >  2:653748/1‑103 (MQ=255)                                                                                           ggCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCa                                                                                        <  1:653748/103‑1 (MQ=255)                                                                                            gCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACg                                        >  1:599964/1‑150 (MQ=255)                                                                                                  ccgggctgcagcctgccagcaggccaagcccgGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGAc                                                                             <  1:314770‑M2/75‑1 (MQ=255)                                                                                                  ccgggctgcagcctgccagcaggccaagcccgGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGAc                                                                             >  2:314770‑M2/33‑107 (MQ=255)                                                                                                   cgggctgcagcctgccagcaggccaagcccgGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCgg                                                                                                   >  2:125610‑M2/32‑84 (MQ=255)                                                                                                   cgggctgcagcctgccagcaggccaagcccgGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCgg                                                                                                   <  1:125610‑M2/53‑1 (MQ=255)                                                                                                    GGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACGGCAGCATg                                <  2:319627‑M1/150‑1 (MQ=255)                                                                                                        tgcagcctgccagcaggccaagcccgGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACGGCAGCATGCCGa                            >  1:179855‑M2/27‑150 (MQ=255)                                                                                                           gCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACGGCAGCATGCCGATgg                         <  2:599964/150‑1 (MQ=255)                                                                                                             ctgctgGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACGGCAGCATGCCGATGGtc                       >  1:67240/1‑150 (MQ=255)                                                                                                                ctgGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACGGCAGCATGCCGATGGtcttc                    >  1:696967/1‑150 (MQ=255)                                                                                                                         tGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGa                                                 <  1:705966/112‑1 (MQ=255)                                                                                                                         tGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGa                                                 >  2:705966/1‑112 (MQ=255)                                                                                                                           cAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGt                                                               <  2:455590/96‑1 (MQ=255)                                                                                                                           cAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGt                                                               >  1:455590/1‑96 (MQ=255)                                                                                                                                cgGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACAGGAGCAACGAAATCCTCGGGCGCAAGTTCAACCTCCTAATCCCGCAAGGTAACTTGCTCGCCCTGTCGAGCTTTTACGGCAGCATGCCGATGGTCTTCTTCGGCTTCACCCAGt    <  1:319627‑M2/148‑1 (MQ=255)                                                                                                                                  gcccggGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACGGCAGCATGCCGATGGTCTTCTTCGGCTTCACCCAGTGc  <  2:718694/150‑1 (MQ=255)                                                                                                                                  |                                                                                                                                                      GACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTTTACGGCAGCATGCCGATGGTCTTCTTCGGCTTCACCCAGTGC  >  NC_002947/2719650‑2719928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.