New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3276854	28 (0.880)	6 (0.190)	6/246	NT	18.0%	intergenic (‑116/+167)	PP_2875/ampC	hypothetical protein/beta‑lactamase
	?	NC_002947	= 3276884	27 (0.860)					intergenic (‑146/+137)	PP_2875/ampC	hypothetical protein/beta‑lactamase

CCCCCATTACCCATTCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3276725‑3276854 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cAGACGGCCTGCGCGGTAACGCAGGCCGTCCGTGGAGAGGGAAACTGTCCAAAAGGCAGCGTGAGAAAGCCCCTGTTGCGATGCTGCTGTAGCAGCCTTGGTAGTGCGCTACACCGTGATAGCGCCAACTGTGAAAA  <  NC_002947/3276884‑3276749                                                                                                                                                                                                                                                                            CCCCCATTACCCATTCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCATCTCCCCGACCGGCCTGCGCGGTAACc                                                                                                                      >  2:688397/1‑149    CCATTACCCATGCATAGGTGATTTTCACAGTTGGCGTTATCACTGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGCGGTAACGCAG                                                                                                                   <  1:688397/150‑1      ATTACCCATTCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACAGACGGCCTGCGCGGTAACGCAGGC                                                                                                                 >  1:447093/1‑150                                                                                              TTTCTCACTCTGCCTTTTGGACAGTTTCCCTCTCCACAGACGGCCTGCGCGGTAACGCAGGCC                                                                                                                >  1:158726/1‑63                                                                                              TTTCTCACTCTGCCTTTTGGACAGTTTCCCTCTCCACAGACGGCCTGCGCGGTAACGCAGGCC                                                                                                                <  2:158726/63‑1                                                                                                                     GTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGTGGAGAGGGAAACTGTCCAAAAGGCAGCGTGAGAAAGCCCCTGTTGCGATGCTGCTGTAGCAGCCTTGGTAGTGCGCTACACCGTGATAGCGCCAACTGTGAAAA  >  2:447093/1‑150                                                                                                                                                                                                                                                                            CCCCCATTACCCATTCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3276725‑3276854 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cAGACGGCCTGCGCGGTAACGCAGGCCGTCCGTGGAGAGGGAAACTGTCCAAAAGGCAGCGTGAGAAAGCCCCTGTTGCGATGCTGCTGTAGCAGCCTTGGTAGTGCGCTACACCGTGATAGCGCCAACTGTGAAAA  <  NC_002947/3276884‑3276749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.