New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3276854	28 (0.880)	6 (0.190)	6/246	NT	18.0%	intergenic (‑116/+167)	PP_2875/ampC	hypothetical protein/beta‑lactamase
	?	NC_002947	= 3276884	27 (0.860)					intergenic (‑146/+137)	PP_2875/ampC	hypothetical protein/beta‑lactamase

CCATTCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCG  >  NC_002947/3276735‑3277030                                                                                                                                                      |                                                                                                                                                   ccATTCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCt                                                                                                                                                    >  2:811046/1‑150 (MQ=255) ccATTCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCt                                                                                                                                                    >  2:388581/1‑150 (MQ=255)    ttCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGa                                                                                                                                                 >  2:783834/1‑150 (MQ=255)           gTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCAGGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCt                                                                                                                                          <  1:811046/150‑1 (MQ=255)           gTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCt                                                                                                                                          <  1:388581/150‑1 (MQ=255)               ttttCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACAGACGGCCTGCGCGGTAACGCAGGCCGTCCgtggagagggaaac                                                                                                                                      >  2:447093‑M2/1‑136 (MQ=255)                              cTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCgg                                                                                                                       <  1:354116/150‑1 (MQ=255)                              cTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCgg                                                                                                                       <  1:592622/150‑1 (MQ=255)                                       tgtAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGc                                                                                                              <  1:436044/150‑1 (MQ=255)                                        gtAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCt                                                                                                             <  2:381920/150‑1 (MQ=255)                                                 tACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGc                                                                                                    >  1:430230/1‑150 (MQ=255)                                                                agcagcATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGTCCAAGCGCGATGAAc                                                                                     <  2:53470/150‑1 (MQ=255)                                                                   agcaTCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGc                                                                                  <  2:844847/150‑1 (MQ=255)                                                                      aTCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTc                                                                               >  1:791612/1‑150 (MQ=255)                                                                               ggggCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCAtttt                                                                      <  1:783834/150‑1 (MQ=255)                                                                                 ggCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGt                                                                    >  2:294677/1‑150 (MQ=255)                                                                                               gCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTg                                                      >  2:541812/1‑150 (MQ=255)                                                                                                 cTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCt                                                    <  1:133161/150‑1 (MQ=255)                                                                                                    ttGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCAc                                                 <  2:791612/150‑1 (MQ=255)                                                                                                       gACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTAc                                              >  2:195564/1‑150 (MQ=255)                                                                                                          aGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGGTCACttcttt                                           >  2:476866/1‑145 (MQ=255)                                                                                                            tttCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCt                                         >  2:667880/1‑150 (MQ=255)                                                                                                                 ctctCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCAtttt                                                                      <  2:701482/116‑1 (MQ=255)                                                                                                                 ctctCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCAtttt                                                                      >  1:701482/1‑116 (MQ=255)                                                                                                                  tctcCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCGCTACATTCTGTCGtt                                   >  1:447729/1‑150 (MQ=255)                                                                                                                             ggCCTGCGTTACCGCGCAGGCCGTCTgtggagagggaaactgtccaaaaggcagagtgagaaa                                                                                                               >  1:158726‑M2/1‑26 (MQ=255)                                                                                                                             ggCCTGCGTTACCGCGCAGGCCGTCTgtggagagggaaactgtccaaaaggcagagtgagaaa                                                                                                               <  2:158726‑M2/63‑38 (MQ=255)                                                                                                                             ggCCTGCGTTAACGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACaa                        >  2:269612/1‑150 (MQ=255)                                                                                                                              gCCTGCGTTACCGCGCAGGCCGTCTgtggagagggaaactgtccaaaaggcagcgtgagaaagcccctgttgcgatgctgctgtagcagccttggtagtgcgctacaccgtgatagcgccaactgtgaaaatcacctatgaatgggtaat                       >  1:447093‑M2/1‑25 (MQ=255)                                                                                                                                cTGCGTTACCGCGCAGGCCGTCCgtggagagggaaactgtccaaaaggcagcgtgagaaagcccctgttgcgatgctgctgtagcagccttggtagtgcgctacacagtgataacgccaactgtgaaaatcacctatgcatgggtaatgg                     <  1:688397‑M2/150‑128 (MQ=255)                                                                                                                                 tGCGTTACCGCGCAGACCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCAtt                                                                        <  1:80668/98‑1 (MQ=255)                                                                                                                                 tGCGTTACCGCGCAGACCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCAtt                                                                        >  2:80668/1‑98 (MQ=255)                                                                                                                                   ggtTACCGCGCAGGCCGGTCggggagatggaaactgtccaaaaggcagcgtgagaaagcccctgttgcgatgctgctgtagcagccttggtagtgcgctacaccgtgatagcgccaactgtgaaaatcacctatgaatgggtaatggggg                  >  2:688397‑M2/2‑20 (MQ=255)                                                                                                                                        ccGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGc             >  1:718732/1‑150 (MQ=255)                                                                                                                                        ccGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGc             >  2:2718/1‑150 (MQ=255)                                                                                                                                            gcAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTta         <  1:2718/150‑1 (MQ=255)                                                                                                                                                   gTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCg  <  2:430230/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CCATTCATAGGTGATTTTCACAGTTGGCGCTATCACGGTGTAGCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCG  >  NC_002947/3276735‑3277030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.