New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3352188 =	41 (1.290)	3 (0.100)	3/236	NT	8.0%	intergenic (+35/+107)	PP_2947/PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
	?	NC_002947	3352244 =	30 (1.000)					intergenic (+91/+51)	PP_2947/PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator

GCTGATGCCAAAATTTACGAAGTATTGAAACGGACACTGAGCGCTTAGTGGCGAAACTTCCTGTTTAACCACGTCAGCTCATTCCGCCCACCCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3352342‑3352188 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgttCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGAGGAAATCACCCGCAGCCATCGACTGGC  >  NC_002947/3352244‑3352392                                                                                                                                                                                                                                                                                                                  GCTGATGCCAAAATTTACGAAGTATTGAAACGGACACTGAGCGCTTAGTGGCGAAACTTCCTGTTTAACCACGTCAGCTCATTCCGCCCACCCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAG                                                                                                                                                            <  1:785155/150‑1                                                                                                     ACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCAT                                                        >  2:293276/1‑150                                                                                                                   GGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGA                                                 <  1:537608/143‑1                                                                                                                   GGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGA                                                 >  2:537608/1‑143                                                                                                                                                        CGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGAGGAAATCACCCGCAGCCATCGACT     <  2:435951/150‑1                                                                                                                                                           TCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGAGGAAATCACCCGCAGCCATCGACTGGC  <  2:785155/150‑1                                                                                                                                                                                                                                                                                                                  GCTGATGCCAAAATTTACGAAGTATTGAAACGGACACTGAGCGCTTAGTGGCGAAACTTCCTGTTTAACCACGTCAGCTCATTCCGCCCACCCACGATGAACGCCCTGTTTCGAGGAGGCGACGCTGTCGCTTCCTCGAAAAAGAACAAGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3352342‑3352188 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgttCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGGCATCAGCCGATTGGGCGACATTGAAACGGAGGAAATCACCCGCAGCCATCGACTGGC  >  NC_002947/3352244‑3352392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.