New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3352188 =	41 (1.290)	3 (0.100)	3/236	NT	8.0%	intergenic (+35/+107)	PP_2947/PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
	?	NC_002947	3352244 =	30 (1.000)					intergenic (+91/+51)	PP_2947/PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator

GTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGG  >  NC_002947/3352039‑3352335                                                                                                                                                      |                                                                                                                                                    gccagtcgatggctgcgggtgatttcctccgtttcaatgtcgcccaatcggctgatgccaaaatttacgaagtattgaaacggacactgagcgcttagtggcgaaacttcctgtttaaccacgtcagctcattccgcccacccacgatga                                                                                                                                                     <  2:785155‑M1/1‑1 (MQ=255)    agtcgatggctgcgggtgatttcctccgtttcaatgtcgcccaatcggctgatgccaaaatttacgaagtattgaaacggacactgagcgcttagtggcgaaacttcctgtttaaccacgtcagctcattccgcccacccacgatgAACg                                                                                                                                                  <  2:435951‑M1/4‑1 (MQ=255)       gAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCt                                                                                                                                               >  2:803910/1‑150 (MQ=255)         aCCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTg                                                                                                                                             <  2:205299/150‑1 (MQ=255)           ccGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGtt                                                                                                                                           >  2:671744/1‑150 (MQ=255)           ccGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGtt                                                                                                                                           >  1:652083/1‑150 (MQ=255)           ccGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGtt                                                                                                                                           >  1:651653/1‑150 (MQ=255)              cATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCtt                                                                                                                                        >  1:796266/1‑150 (MQ=255)                   tGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCg                                                                                                                                   >  1:387520/1‑150 (MQ=255)                    ggAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGa                                                                                                                                  >  2:595076/1‑150 (MQ=255)                          gTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGc                                                                                                                            <  1:338205/150‑1 (MQ=255)                          gTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGc                                                                                                                            <  2:652083/150‑1 (MQ=255)                          gTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGc                                                                                                                            <  2:651653/150‑1 (MQ=255)                                             gCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGa                                                                                                         >  1:435951/1‑150 (MQ=255)                                               aaCCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGaaa                                                                                                       >  2:538069/1‑150 (MQ=255)                                               aaCCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCACCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTc                                                                                                                   >  1:799750/1‑138 (MQ=255)                                               aaCCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCACCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTc                                                                                                                   <  2:799750/138‑1 (MQ=255)                                                tcggctgatgccaaaatttacgaagtattgaaacggacactgagcgcttagtggcgaaacttcctgtttaaccacgtcagctcattccgcccacccacgatgAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGcctcc                                                                                                             >  2:537608‑M1/103‑143 (MQ=255)                                                tcggctgatgccaaaatttacgaagtattgaaacggacactgagcgcttagtggcgaaacttcctgtttaaccacgtcagctcattccgcccacccacgatgAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGcctcc                                                                                                             <  1:537608‑M1/41‑1 (MQ=255)                                                 ccACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACa                                                                                                     >  2:298417/1‑150 (MQ=255)                                                  cacaAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAg                                                                                                    >  2:572700/1‑150 (MQ=255)                                                  cacaAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATAATTTTGGTGCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAg                                                                                                    <  1:225827/150‑1 (MQ=255)                                                       atgccaaaatttacgaagtattgaaacggacactgagcgcttagtggcgaaacttcctgtttaaccacgtcagctcattccgcccacccacgatgAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGt                                                                                               >  2:293276‑M1/96‑150 (MQ=255)                                                            tCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATc                                                                                          <  1:298417/150‑1 (MQ=255)                                                              aaGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACa                                                                                                                        >  2:123484/1‑118 (MQ=255)                                                              aaGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACa                                                                                                                        <  1:123484/118‑1 (MQ=255)                                                                ggAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCgtgg                                                                                      <  2:796266/150‑1 (MQ=255)                                                                          gCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGaa                                                                            >  1:433756/1‑150 (MQ=255)                                                                               gTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGc                                                                       <  1:803910/150‑1 (MQ=255)                                                                                tACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGTGCGTTCATCGTGGGTGGGCGGAATGAGCt                                                                      <  1:538069/150‑1 (MQ=255)                                                                                       cAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATTTCGCCCTCATTTCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACgaga                                                               <  1:457915/150‑4 (MQ=255)                                                                                                  gAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGaa                                                    >  1:641659/1‑150 (MQ=255)                                                                                                       cTGGGTGTCCTTGTTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTc                                               <  2:265832/150‑1 (MQ=255)                                                                                                                 tGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAgc                                     >  2:643041/1‑150 (MQ=255)                                                                                                                   aTTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAga                                                                                                                      <  2:584041/67‑2 (MQ=255)                                                                                                                   aTTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGc                                                                                                                      >  1:584041/1‑67 (MQ=255)                                                                                                                      tgtgCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCa                                <  2:641659/150‑1 (MQ=255)                                                                                                                        tgCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGAc                                                                   <  1:312620/113‑1 (MQ=255)                                                                                                                        tgCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGAc                                                                   >  2:312620/1‑113 (MQ=255)                                                                                                                          cTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAgtgt                            >  1:211609/1‑150 (MQ=255)                                                                                                                            gATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTcc                          <  2:211609/150‑1 (MQ=255)                                                                                                                              tGTCGCCCTCACTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGCATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGt                        <  1:21709/150‑1 (MQ=255)                                                                                                                                   cccTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCaa                   <  1:595076/150‑1 (MQ=255)                                                                                                                                   cccTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCaa                   <  1:805193/150‑1 (MQ=255)                                                                                                                                       cATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACt               <  2:236734/150‑1 (MQ=255)                                                                                                                                        aTTGCGCTATCTGAAACGCCTTGTTCTTTTTCTAGGAATGGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACtt              >  1:236734/1‑150 (MQ=255)                                                                                                                                                    gAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCt                                  <  2:341951/118‑1 (MQ=255)                                                                                                                                                    gAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCt                                  <  2:341801/118‑1 (MQ=255)                                                                                                                                                    gAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCt                                  >  1:341951/1‑118 (MQ=255)                                                                                                                                                    gAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCt                                  >  1:341801/1‑118 (MQ=255)                                                                                                                                                    gAAACGCCTTGTTCTTTTTAGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTgg  <  2:387520/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    GTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGGCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGGAAGTTTCGCCACTAAGCGCTCAGTGTCCGTTTCAATACTTCGTAAATTTTGG  >  NC_002947/3352039‑3352335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.