| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3737035 = | 29 (0.920) | 4 (0.130) | 4/238 | NT | 12.7% | coding (1889/3093 nt) | PP_3302 | RND family transporter |
| ? | NC_002947 | 3737054 = | 27 (0.890) | coding (1908/3093 nt) | PP_3302 | RND family transporter | |||||
CGATAGGCGACCGGGTAGGGGGAGTAGGGCCCGAATACCAGTTGTGTTACCCGCACTTGAGCGCCGGGCGCCAGACCTTCGGAGGCTGCCTCCCGAAGACGATGCTTGAGGGC‑CTCACGAGCGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3737161‑3737035‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCGGGTGATGGGCCCGGATGCCTCGCAACTGCGTCAGATTGCA > NC_002947/3737054‑3737201 CGATAGGCGACCGGGTAGGGGGAGTAGGGCCCGAATACCAGTTGTGTTACCCGCACTTGAGCGCCGGGCGCCAGACCTTCGGAGGCTGCCTCCCGAAGACGATGCTTGAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCA > 1:843518/1‑149CGATAGGCGACCGGGTAGGGGGAGTAGGGCCCGAATACCAGTTGTGTTACCCGCACTTGAGCGCCGGGCGCCAGACCTTCGGAGGCTGCCTCCCGAAGACGATGCTTGAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCA < 2:843518/149‑1 TGTTACCCGCACTTGAGCGCCGGGCGCCAGACCTTCGGAGGCTGCCTCCCGAAGACGATGCTTGAGGGCGCTCGTGAG‑GCCCTCAAGCATC > 1:359772/1‑91 TGTTACCCGCACTTGAGCGCCGGGCGCCAGACCTTCGGAGGCTGCCTCCCGAAGACGATGCTTGAGGGCGCTCGTGAG‑GCCCTCAAGCATC < 2:359772/91‑1 CCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGGGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACCCCCCCTACCCGGTGGCTTATCGGGTGATGGGCCCGGATGCCTCGCAACTGCGTCAGATTG < 1:745436/150‑1 CCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCGGGTGATGGGCCCGGATGCCTCGCAACTGCGTCAGATTG > 2:341717/1‑150 CCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTACAACGCGGGGTTGACAATTGCGGGTAACACAACGGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCGGGTGATGGGCCCGGATGCCTCGCAACTGCGTCAGATTGC > 1:575014/1‑150 CTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCGGGTGATGGGCCCGGATGCCTCGCAACTGCGTCAGATTGCA > 2:449769/1‑150 CGATAGGCGACCGGGTAGGGGGAGTAGGGCCCGAATACCAGTTGTGTTACCCGCACTTGAGCGCCGGGCGCCAGACCTTCGGAGGCTGCCTCCCGAAGACGATGCTTGAGGGC‑CTCACGAGCGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3737161‑3737035‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCGGGTGATGGGCCCGGATGCCTCGCAACTGCGTCAGATTGCA > NC_002947/3737054‑3737201 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |