| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3737035 = | 29 (0.920) | 4 (0.130) | 4/238 | NT | 12.7% | coding (1889/3093 nt) | PP_3302 | RND family transporter |
| ? | NC_002947 | 3737054 = | 27 (0.890) | coding (1908/3093 nt) | PP_3302 | RND family transporter | |||||
ATCAAGGTAGAGTCCTGGCTACGTCAGCAAGAGGAGGCAAAGATTGTCACCACTTACATCGGCCAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCGGGTGATGGGCCCGGATGCCTC > NC_002947/3736887‑3737182 | tgcaatctgacgcagttgcgaggcatccgggcccatcacccgataggcgaccgggtagggggagtagggcccgaataccagttgtgttacccgcacttgagcgccgggcgccagaccttcggaggctgcctcccgaagacgatgcttgAg > 2:449769‑M1/149‑150 (MQ=255)aTCAAGGTAGAGTCCTGGCTACGTCAGCAAGAGGAGGCAAAGATTGTCACCACTTACATCGGCCAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAg > 2:745436/1‑150 (MQ=255) gcaatctgacgcagttgcgaggcatccgggcccatcacccgataggcgaccgggtagggggagtagggcccgaatacccgttgtgttacccgcaattgtcaaccccgcgttgtaccttcggaggctgcctcccgaagacgatgcttgAgg > 1:575014‑M1/148‑150 (MQ=255) caatctgacgcagttgcgaggcatccgggcccatcacccgataggcgaccgggtagggggagtagggcccgaataccagttgtgttacccgcacttgagcgccgggcgccagaccttcggaggctgcctcccgaagacgatgcttgAggg > 2:341717‑M1/147‑150 (MQ=255) caatctgacgcagttgcgaggcatccgggcccatcacccgataagccaccgggtagggggggtagggcccgaataccagttgtgttacccgcacttgagccccgggcgccagaccttcggaggctgcctcccgaagacgatgcttgAggg < 1:745436‑M1/4‑1 (MQ=255) tAGAGTCCTGGCTACGTCAGCAAGAGGAGGCAAAGATTGTCACCACTTACATCGGCCAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTc > 2:130558/1‑150 (MQ=255) gTCCTGGCTACGTAAGCAAGAGGAAGTAATAAAACACTGCTCTTACTTCGGCCATGTCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGa < 2:437533/150‑1 (MQ=255) aCGTCAGCAAGAGGAGGCAAAGATTGTCACCACTTACATCGGCCAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCaa < 2:192061/150‑1 (MQ=255) tCAGAAGGAGGGGGCAAAGATTGTCACCACTTACATCGGCCAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCa > 2:481259/1‑150 (MQ=255) aGCAAGAGGAGGCAAAGATTGTCACCACTTACATCGGCCAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATc < 1:130558/150‑1 (MQ=255) aGCAAGAGGAGGCAAAGATTGTCACCACTTACATCGGCCAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATc > 2:670500/1‑150 (MQ=255) gCAAGAGGAGGCAAAGATTGTCACCACTTACATCGGCCAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGACTCACCGGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGATCGTGCG‑GCCCTCAAGCGTCg > 1:53428/1‑150 (MQ=255) cTTACATCGGCCAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTc < 2:816515/150‑1 (MQ=255) cGGCCAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGgc > 2:411396/1‑147 (MQ=255) cGGCCAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGgc < 1:411396/147‑1 (MQ=255) ccAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCgg < 2:664425/150‑1 (MQ=255) cAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCgag < 1:670500/150‑3 (MQ=255) aaGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGgcg > 1:159879/1‑150 (MQ=255) ccgccccgcTTCTTCCTAGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCATCCTCGCCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGACTCCGAAGGTCTGGCGCCCGGCGCTCaa < 1:481259/150‑1 (MQ=255) ccgcTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCg > 1:594793/1‑150 (MQ=255) aTGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTg < 1:228010/114‑1 (MQ=255) aTGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTg > 2:228010/1‑114 (MQ=255) ggCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTAtt < 2:594793/150‑1 (MQ=255) cTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGAGGGTAACACAACTGGTATTGGGGc > 1:391521/1‑150 (MQ=255) tCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGGGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCg > 2:123088/1‑150 (MQ=255) tttGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTg < 2:471307/120‑1 (MQ=255) tttGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTg > 1:471307/1‑120 (MQ=255) cAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCGACTCCCCCTACCCGGTCGCCTa > 1:273369/1‑150 (MQ=255) tgcctcccgaagacgatgcttgAGGGC‑CTCACGAGCGCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCg > 1:843518‑M1/23‑149 (MQ=255) tgcctcccgaagacgatgcttgAGGGC‑CTCACGAGCGCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCg < 2:843518‑M1/127‑1 (MQ=255) tcgtcCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCGGGTGa > 2:706380/1‑150 (MQ=255) aacGAAAACCAGGGCGGTCGTGAG‑GGCCTAAAGGATTGTCTTCGGGAGGCAGAATCCGAAAGTCTGGAGCACGGAGATAAAATGCGGGTAAAACAAATGGTATTAGGGACCTACTCCCCCTACCCGGTCGCCTATTGGGTGATGGGCACg > 2:116673/3‑150 (MQ=255) ccGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCGGGTGATGGGCCCgg > 1:10785/1‑150 (MQ=255) gatgcttgAGGGC‑CTCACGAGCGCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAaca < 2:359772‑M1/83‑1 (MQ=255) gatgcttgAGGGC‑CTCACGAGCGCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAaca > 1:359772‑M1/9‑91 (MQ=255) cGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTaa < 2:590699/89‑1 (MQ=255) cGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTaa > 1:590699/1‑89 (MQ=255) gAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCGGGTGATGGGCCCGGAt < 2:53428/150‑1 (MQ=255) ccAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCGGGTGATGGGCCCGGATGCCTc > 1:735553/1‑150 (MQ=255) | ATCAAGGTAGAGTCCTGGCTACGTCAGCAAGAGGAGGCAAAGATTGTCACCACTTACATCGGCCAAGGCCCGCCCCGCTTCTTCCTGGCAATGGCCCCTGAGTTGCCCGACCCGTCCTTTGCCAAGATTGTCGTCCTGACCGAAAACCAGGGCGCTCGTGAG‑GCCCTCAAGCATCGTCTTCGGGAGGCAGCCTCCGAAGGTCTGGCGCCCGGCGCTCAAGTGCGGGTAACACAACTGGTATTCGGGCCCTACTCCCCCTACCCGGTCGCCTATCGGGTGATGGGCCCGGATGCCTC > NC_002947/3736887‑3737182 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |