New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4473844	19 (0.600)	7 (0.240)	7/232	NT	29.3%	intergenic (+14/+200)	PP_3963/PP_3964	hypothetical protein/transposase
	?	NC_002947	= 4473854	16 (0.540)					intergenic (+24/+190)	PP_3963/PP_3964	hypothetical protein/transposase

CCCAACGGGGTGGCCAAGGAGGCCATTCCACCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4473709‑4473844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccagggTTATCCCTCTCCCTGGCTATTTGCTCAGCGGTTGTCTTCCGCCATTCCGCTGTCTTCGTCCTGAATAGCTTGCGACTCATCGTCCATACCTTTCTCCCGGTCAGTTTTAATACCGGTGGAATGGCCTCCTTGGCCACCCCGTTGGG  <  NC_002947/4473854‑4473709                                                                                                                                                                                                                                                                                            CCCAACGGGGTGGCCAAGGAGGCCATTCCACCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGTTATCCCTCTCCCT                                                                                                                                      <  2:435127/150‑1   CAACGGGGTGGCCAAGGAGGCCATTCCACCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTAGCAAGCTATTTAGGACGAAGACAGCGGAATGTCGGAAGACAACCGCTGATCAAATAGCCAGGGTTATCCCTATCCCTGG                                                                                                                                    >  2:604632/1‑150                               CCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGTTATCCCTCTCCCTGGCTATT                                                                                                                               >  1:60018/1‑127                               CCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGTTATCCCTCTCCCTGGCTATT                                                                                                                               <  2:60018/127‑1                                                                                                           GGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTATTTGCTCAGCGGTTGTCTTCCGCCATTCCGCTGTCTTCGTCCTGAATAGCTTGCGACTCATCGTCCATACCTTTCTCCCGGTCAGTTTTAATACCGGTGGA                            >  1:604632/1‑150                                                                                                                  AACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTATTTGCTCAGCGGTTGTCTTCCGCCATTCCGCTGTCTTCGTCCTGAATAGCTTGCGACTCATCGTCCATACCTTTCTCCCGGTCAGTTTTAATACCGGT                               <  1:535681/140‑1                                                                                                                  AACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTATTTGCTCAGCGGTTGTCTTCCGCCATTCCGCTGTCTTCGTCCTGAATAGCTTGCGACTCATCGTCCATACCTTTCTCCCGGTCAGTTTTAATACCGGT                               >  2:535681/1‑140                                                                                                                                   CCAGGGTTATCCCTCTCCCTGGCTATTTGCTCAGCGGTTGTCTTCCGCCATTCCGCTGTCTTCGTCCTGAATAGCTTGCGACTCATCGTCCATACCTTTCTCCCGGTCAGTTTTAATACCGGTGGAATGGCCTCCTTGGCCACCCCGTTG    <  2:2145/150‑1                                                                                                                                     AGGGTTATCCCTCTCCCTGGCTATTTGCTCAGCGGTTGTCTTCCGCCATTCCGCTGTCTTCGTCCTGAATAGCTTGCGACTCATCGTCCATACCTTTCTCCCGGTCAGTTTTAATACCGGTGGAATGGCCTCCTTGGCCACCCCGTTGGG  >  2:46428/1‑150                                                                                                                                                                                                                                                                                            CCCAACGGGGTGGCCAAGGAGGCCATTCCACCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4473709‑4473844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccagggTTATCCCTCTCCCTGGCTATTTGCTCAGCGGTTGTCTTCCGCCATTCCGCTGTCTTCGTCCTGAATAGCTTGCGACTCATCGTCCATACCTTTCTCCCGGTCAGTTTTAATACCGGTGGAATGGCCTCCTTGGCCACCCCGTTGGG  <  NC_002947/4473854‑4473709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.