| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4473844 | 19 (0.600) | 7 (0.240) | 7/232 | NT | 29.3% | intergenic (+14/+200) | PP_3963/PP_3964 | hypothetical protein/transposase |
| ? | NC_002947 | = 4473854 | 16 (0.540) | intergenic (+24/+190) | PP_3963/PP_3964 | hypothetical protein/transposase | |||||
CCCAACGGGGTGGCCAAGGAGGCCATTCCACCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTAAGGAAACAGTACAGTTTCCCAATTGATAGCCGAAAAAATCCCGCGCAGAAAGCGCAGGCCGCTTAGAGAGCAACAAC > NC_002947/4473709‑4473990 | cccAACGGGGTGGCCAAGGAGGCCATTCCACCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAAccct > 2:46428‑M2/1‑146 (MQ=255) cAACGGGGTGGCCAAGGAGGCCATTCCACCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAAccctgg < 2:2145‑M2/150‑7 (MQ=255) gaggCCATTCCACCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTc < 2:100379/150‑1 (MQ=255) cATTCCACCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTcc < 2:629770/134‑1 (MQ=255) cATTCCACCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTcc > 1:629770/1‑134 (MQ=255) tCCACCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGTTATCCCTCTccctggctatttgctcagcggttgtcttcc > 1:604632‑M2/1‑120 (MQ=255) aCCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGTTATCCCTCTccctggctatttgctcagcggtt < 1:535681‑M2/140‑24 (MQ=255) aCCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGTTATCCCTCTccctggctatttgctcagcggtt > 2:535681‑M2/1‑117 (MQ=255) aaaaCTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAggaat < 1:585741/150‑1 (MQ=255) ggACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTAAGGaaa < 1:2145/150‑1 (MQ=255) aCGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTAAGGAAaca < 1:585391/150‑1 (MQ=255) aGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTAAGGAAACAGTACAGTTTCCCAATTGATAGCCGaaaa > 2:10597/1‑150 (MQ=255) aGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCtt < 1:220440/72‑1 (MQ=255) aGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCtt > 2:220440/1‑72 (MQ=255) gCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTAAGGAAaca > 1:564058/1‑117 (MQ=255) gCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTAAGGAAaca < 2:564058/117‑1 (MQ=255) cGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTAAGGAAACAGTACAGTTTCCCAATTGATAGCCGAAAAAATCCCGCGCAGaa > 1:596994/1‑150 (MQ=255) cGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTaa > 1:611797/1‑90 (MQ=255) cGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTaa < 2:611797/90‑1 (MQ=255) tGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTAAGGAAACAGTACAGTTTCCCAATTGATAGCCGAAAAAATCCCGCGCAGAAAGCGCAGGCCGCtt > 2:501701/1‑150 (MQ=255) aaaTAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTAAGGAAACAGTACAGTTTCCCAATTGATAGCCGAAAAAATCCCGCGCAGAAAGCGCAGGCCGCTTaga < 1:725709/148‑1 (MQ=255) aaaTAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTAAGGAAACAGTACAGTTTCCCAATTGATAGCCGAAAAAATCCCGCGCAGAAAGCGCAGGCCGCTTaga > 2:725709/1‑148 (MQ=255) aaTAGCCAGGGAGAGGGATAAccctggctatttgctcagcggttgtcttccgccattccgctgtcttcgtcctgaatagcttgcgactcatcgtccatacctttctcccggtcagttttaataccgg > 1:60018‑M2/1‑21 (MQ=255) aaTAGCCAGGGAGAGGGATAAccctggctatttgctcagcggttgtcttccgccattccgctgtcttcgtcctgaatagcttgcgactcatcgtccatacctttctcccggtcagttttaataccgg < 2:60018‑M2/127‑107 (MQ=255) aaTAGCCAGGGAGAGGAATAACCCTGGCTTCCCTAACATCTCCCAACCCACCTTTCGCGCTCGCTCACCCGGTCCGGCTAAGGAAACAGTACAGTTTCCCAATTGATAGCCGAAAAAATCCCGCGCAGAAAGCGCAGGCCGCTTagagag < 1:444277/150‑1 (MQ=255) ccAGGGATAGGGATAAccctggctatttgatcagcggttgtcttccgacattccgctgtcttcgtcctaaatagcttgctactcatcgtccatacctttctcccggtcagttttaataccggtggaatggcctccttggccaccccgttg > 2:604632‑M2/1‑16 (MQ=255) aGGGAGAGGGATAAccctggctatttgctcagcggttgtcttccgccattccgctgtcttcgtcctgaatagcttgcgactcatcgtccatacctttctcccggtcagttttaataccggtggaatggcctccttggccaccccgttggg < 2:435127‑M2/150‑137 (MQ=255) | CCCAACGGGGTGGCCAAGGAGGCCATTCCACCGGTATTAAAACTGACCGGGAGAAAGGTATGGACGATGAGTCGCAAGCTATTCAGGACGAAGACAGCGGAATGGCGGAAGACAACCGCTGAGCAAATAGCCAGGGAGAGGGATAACCCTGGCTTCCCCAACATCTTCGAAGCCACCATTCGAGGAATGACGGAATGACCGGCTAAGGAAACAGTACAGTTTCCCAATTGATAGCCGAAAAAATCCCGCGCAGAAAGCGCAGGCCGCTTAGAGAGCAACAAC > NC_002947/4473709‑4473990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |