| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4727775 | 41 (1.290) | 8 (0.270) | 7/236 | NT | 16.5% | intergenic (‑348/+56) | brnQ/sucD | branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha |
| ? | NC_002947 | = 4727812 | 42 (1.390) | intergenic (‑385/+19) | brnQ/sucD | branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha | |||||
ACATGTTTGTCGTCTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4727626‑4727775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccacGCGC‑ACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTC < NC_002947/4727812‑4727767 ACATGTTTGTCGTCTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCAC < 2:771577/150‑1 TTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCCCACGCGC‑ACAGAGGCCACCTTCGGGTGGCCTTTGTCGT > 1:56520/1‑150 TCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACATACACAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACGCGC‑ACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGG > 1:575769/1‑150 GATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACGCGC‑ACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTC < 2:575769/150‑1 GATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAGAGGCCACCTTCGGGTGGCCTTTG > 1:716000/1‑136 GATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAGAGGCCACCTTCGGGTGGCCTTTG < 2:716000/136‑1 TTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCCCACGCGC‑ACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTC < 2:56520/150‑1 CATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACGCGC‑ACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTT < 1:527637/141‑1 CATTCGTCTGCGTAAAAAGTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACGCGC‑ACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTT > 2:527637/1‑141 ACATGTTTGTCGTCTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4727626‑4727775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccacGCGC‑ACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTC < NC_002947/4727812‑4727767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |