New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4727775 | 41 (1.290) | 8 (0.270) | 7/236 | NT | 16.5% | intergenic (‑348/+56) | brnQ/sucD | branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha |
? | NC_002947 | = 4727812 | 42 (1.390) | intergenic (‑385/+19) | brnQ/sucD | branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha |
ACATGTTTGTCGTCTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGC > NC_002947/4727626‑4727923 | aCATGTTTGTCGTCTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCAC < 2:771577‑M1/150‑1 (MQ=255) gtcTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAg < 2:172079/150‑1 (MQ=255) aCCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAg < 2:848586/141‑1 (MQ=255) aCCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAg > 1:848586/1‑141 (MQ=255) gAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAgg < 1:610485/150‑1 (MQ=255) gAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAgg > 2:659700/1‑150 (MQ=255) aCGGCAGCTATTGCCCTAGACTTGCAACACTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTACTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGc < 2:7739/150‑1 (MQ=38) gTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTCTTGCCAGCACCGGCCTCTTCGCGGGTAACCCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCTTCGGGTGGCCTTtgtc < 1:43681/150‑2 (MQ=38) ttatCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCCCACgcgcacagaggccaccttcgggtggcctttgtcgt > 1:56520‑M1/1‑115 (MQ=255) tCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACATACACAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACgcgcacagaggccaccttcgggtggcctttgtcgtatgtgggg > 1:575769‑M1/1‑107 (MQ=255) cGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTggggg < 1:659700/150‑1 (MQ=255) cGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTggggg > 1:414469/1‑150 (MQ=255) gATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACgcgcacagaggccaccttcgggtggcctttgtcgtatgtggggttc < 2:575769‑M1/150‑47 (MQ=255) gATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACatacgacagaggccaccttcgggtggcctttg > 1:716000‑M1/1‑104 (MQ=255) gATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACatacgacagaggccaccttcgggtggcctttg < 2:716000‑M1/136‑33 (MQ=255) ttGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCCCACgcgcacagaggccaccttcgggtggcctttgtcgtatgtggggttc < 2:56520‑M1/150‑47 (MQ=255) tGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTa < 1:9608/150‑1 (MQ=255) aaaCATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGt > 2:635832/1‑123 (MQ=255) aaaCATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGt < 1:635832/123‑1 (MQ=255) aaaCATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGc > 1:790595/1‑150 (MQ=255) cATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACgcgcacagaggccaccttcgggtggcctttgtcgtatgtggggtt < 1:527637‑M1/141‑46 (MQ=255) cATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGt < 1:356710/150‑1 (MQ=255) cATTCGTCTGCGTAAAAAGTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACgcgcacagaggccaccttcgggtggcctttgtcgtatgtggggtt > 2:527637‑M1/1‑96 (MQ=255) tCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTAct > 1:722963/1‑150 (MQ=255) gCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCcaca < 2:560765/88‑1 (MQ=255) gCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCcaca > 1:560765/1‑88 (MQ=255) gTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTg > 1:652813/1‑150 (MQ=255) aaTTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTc > 2:52567/1‑150 (MQ=255) aTTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCa < 1:113089/131‑1 (MQ=255) aTTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCa > 2:113089/1‑131 (MQ=255) aTTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTcc < 2:461870/150‑1 (MQ=255) ttCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTccc > 1:529838/1‑150 (MQ=255) tCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCcca < 2:790595/150‑1 (MQ=255) cTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCccagc < 2:414469/150‑1 (MQ=255) aaaCCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTc > 2:551435/1‑150 (MQ=255) aTCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCa > 1:323336/1‑137 (MQ=255) aTCGCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCTTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCa < 2:323336/137‑1 (MQ=255) ttGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCg > 1:86578/1‑150 (MQ=255) gCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCa < 1:67248/150‑1 (MQ=255) gCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAgg > 2:296027/1‑150 (MQ=255) tctTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTTGCACGTGGCTTCCCAGACAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGaa > 1:225940/1‑150 (MQ=255) ttCGCGGGTAAACACGCTCGTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACg > 1:246910/1‑150 (MQ=255) ggagcgGGTTTACCCGCCCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACg > 2:333061/4‑150 (MQ=255) gcgGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCAc > 1:442497/1‑150 (MQ=255) cgGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACg < 1:551435/150‑1 (MQ=255) gggTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCCGGGAACGCACgg < 2:652813/150‑1 (MQ=255) aaCCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCGACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCGGATGTCAGCCAGGGAACGCACGGtttta > 1:135055/1‑149 (MQ=255) aCCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGAt < 1:394504/124‑1 (MQ=255) aCCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGAt > 2:394504/1‑124 (MQ=255) gCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACAcc > 2:772497/1‑150 (MQ=255) cTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACAccc < 2:720914/150‑1 (MQ=255) ccTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCcgc < 1:372236/150‑1 (MQ=255) gAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCgtggggttcgtaggagcgggtttacccgcgaagaggccggtgctggcaatagagattcttcgataggtttgataggaattttcacgcagacgaatgtttcaatc < 2:575769‑M2/150‑105 (MQ=255) gAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCgtggggggttcgtaggagcgggtttacccgcgaagaggccggtgctggcaatagagattcttcgataggtttgataggaattttcacgcagacgaatgtttcaa < 2:56520‑M2/150‑105 (MQ=255) aa‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCgtggggttcgtaggagcgggtttacccgcgaagaggccggtgctggcaatagagattcttcgataggtttgataggactttttacgcagacgaatg > 2:527637‑M2/1‑45 (MQ=255) aa‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCgtggggttcgtaggagcgggtttacccgcgaagaggccggtgctggcaatagagattcttcgataggtttgataggaattttcacgcagacgaatg < 1:527637‑M2/141‑97 (MQ=255) ccccACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCgtggggttcgtaggagcgggtttacccgcgaagaggccggtgctggcaatagagattcttgtgtatgtttgataggaattttcacgcagacgaatgtttcaatccga > 1:575769‑M2/1‑43 (MQ=255) cccACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAg > 1:51672/1‑150 (MQ=255) acaTACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGggc < 2:529838/150‑1 (MQ=255) | ACATGTTTGTCGTCTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAA‑‑CCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGC > NC_002947/4727626‑4727923 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |