New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4960363 =	23 (0.730)	3 (0.100)	3/240	NT	11.9%	coding (153/1779 nt)	fliF	flagellar M‑ring protein
	?	NC_002947	4960396 =	22 (0.720)					coding (120/1779 nt)	fliF	flagellar M‑ring protein

ATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4960515‑4960363 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTCAAACCGGCATCT  >  NC_002947/4960396‑4960544                                                                                                                                                                                                                                                                                                                ATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTG                                                                                                                                                          >  1:216747/1‑150  TGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGG                                                                                                                                                         <  2:186424/150‑1  TGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGG                                                                                                                                                         <  2:517865/150‑1                                                                                                                  CCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCAGGTTCTAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTG                                         >  1:472458/1‑150                                                                                                                       TCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGG                                                          >  1:615214/1‑128                                                                                                                       TCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGG                                                          <  2:615214/128‑1                                                                                                                                                         CGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTCAAACCGGCATCT  >  2:810642/1‑150                                                                                                                                                                                                                                                                                                                ATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4960515‑4960363 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTCAAACCGGCATCT  >  NC_002947/4960396‑4960544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.