New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4960363 =	23 (0.730)	3 (0.100)	3/240	NT	11.9%	coding (153/1779 nt)	fliF	flagellar M‑ring protein
	?	NC_002947	4960396 =	22 (0.720)					coding (120/1779 nt)	fliF	flagellar M‑ring protein

GTCAGCAGCGGCCAGGGTGTCCATGACCTGCTTGGTGTCCATGCCCGACAGGCTGCCGTACAACGGACGGTAATCGGGTTGTTGCGACCACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTCAAACCGGCATCT  >  NC_002947/4960252‑4960544                                                                                                                                                 |                                                                                                                                                     gTCAGCAGCGGCCAGGATGTCGATGACCTTCTCCGTGTACATGCCCGACAGGCCCCCTTACAACGCACGTGATTCGGGTTGTTGCGACCACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTg                                                                                                                                                 <  1:656201/150‑1 (MQ=255)  cagtcgtcgaaaacgcccccgccaaagctggctagaacctggccaagccgccgctgtttggcatggcgtttctggaaaacatctcgcagatgcccatgctgcgccagatcGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTgg                                                                                                                                                >  1:472458‑M1/111‑150 (MQ=255)     gcagcGGCCAGGGTGTCCATGACCTGCTTGGTGTCCATGCCCGACAGGCTGCCGTACAACGGACGGAAATCGGGTTGTTGCGACCACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGgcgc                                                                                                                                             >  1:355968/1‑150 (MQ=255)      cagcGGCCAGGGTGTCCATGACCTGCTTGGTGTCCATGCCCGACAGGCTGCCGTACAACGGCCGGTAATCGGGTTGTTGCGACCCCAGCACCACCGGAAATCGGATGGCCACGCTGCCCGACACGCCTAGCAGCAGGACGCTCTAGCgca                                                                                                                                            >  2:794921/1‑150 (MQ=255)            ccAGGGTGTCCATGACCTGCTTGGTGTCCATGCCCGACAGGCTGCCGTACAACGGACGGTAATCGGGTTGTTGCGACCACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATgg                                                                                                                                      <  2:192170/150‑1 (MQ=255)            ccAGGGTGTCCATGACCTGCTTGGTGTCCATGCCCGACAGGCTGCCGTACAACGGACGGTAATCGGGTTGTTGCGACCACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATgg                                                                                                                                      >  2:153476/1‑150 (MQ=255)                   cccgccaaagctggctcgccagcggccaagccgccgctgtttggcatggcgtttctggaaaacatctcgcagatgcccatgctgcgccagatcGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGa                                                                                                                                                     >  1:615214‑M1/94‑128 (MQ=255)                   cccgccaaagctggctcgccagcggccaagccgccgctgtttggcatggcgtttctggaaaacatctcgcagatgcccatgctgcgccagatcGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGa                                                                                                                                                     <  2:615214‑M1/35‑1 (MQ=255)                        tGACCTGCTTGGTGTCCATGCCCGACAGGCTGCCGTACAACGGACGGTAATCGGGTTGTTGCGACCACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCgaga                                                                                                                          >  1:272264/1‑150 (MQ=255)                              gCTTGGTGTCCATGCCCGACAGGCTGCCGTACAACGGACGGTAATCGGGTTGTTGCGACCACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGtttt                                                                                                                    <  2:818257/150‑1 (MQ=255)                                        cATGCCCGACAGGCTGCCGTACAACGGACGGTAATCGGGTTGTTGCGACCACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGc                                                                                                          >  1:7678/1‑150 (MQ=255)                                           gCCCGACAGGCTGCCGTACAACGGACGGTAATCGGGTTGTTGCGACCACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCAt                                                                                                       <  2:620492/150‑1 (MQ=255)                                                     cTGCCGTACAACGGACGGTAATCGGGTTGTTGCGACCACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGATATGTTTTCCAGAAACGCCATGCCAAACAgc                                                                                             <  1:282307/150‑1 (MQ=255)                                                       gCCGTACAACGGACGGTAATCGGGTTGTTGCGACCACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAgcgg                                                                                           >  1:759931/1‑150 (MQ=255)                                                                cggacggTAATCGGGTTGTTGCGACCACAGCACAACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCCGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGc                                                                                  <  2:241239/150‑1 (MQ=255)                                                                                        ccACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCggg                                                          <  1:153476/150‑1 (MQ=255)                                                                                           caGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGc                                                       <  1:535154/150‑1 (MQ=255)                                                                                            aGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAgcgg                                                                                           >  2:175086/1‑113 (MQ=255)                                                                                            aGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAgcgg                                                                                           <  1:175086/113‑1 (MQ=255)                                                                                                 cacGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTc                                                 <  1:144077/150‑1 (MQ=255)                                                                                                    ggCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCTCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTcgac                                              <  2:745155/150‑1 (MQ=255)                                                                                                    ggCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTcgac                                              <  2:194165/150‑1 (MQ=255)                                                                                                         ccagatcggcctcctggtcggcctggcggccagcgtggccGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCAGGTTCTAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTg                                         >  1:472458‑M2/41‑150 (MQ=255)                                                                                                              tcggcctcctggtcggcctggcggccagcgtggccGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCggg                                                          >  1:615214‑M2/36‑128 (MQ=255)                                                                                                              tcggcctcctggtcggcctggcggccagcgtggccGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCggg                                                          <  2:615214‑M2/93‑1 (MQ=255)                                                                                                                  CCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCa                                <  2:186424‑M1/150‑1 (MQ=255)                                                                                                                  CCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCa                                <  2:517865‑M1/150‑1 (MQ=255)                                                                                                                   CACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCAt                               >  1:216747‑M1/1‑150 (MQ=255)                                                                                                                             gccAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATc                     >  2:222205/1‑150 (MQ=255)                                                                                                                              ccAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATcc                    <  2:355968/150‑1 (MQ=255)                                                                                                                                    cGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTc              >  2:92403/1‑150 (MQ=255)                                                                                                                                           gaggCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTCTGCCTGCAATTAACGCAACTACTCCTTCAGCCATGGGTTACATCCGTCCTCAAACCgg       >  2:22251/1‑150 (MQ=255)                                                                                                                                                cGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTCAAACCGGCATCt  >  2:810642‑M2/2‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GTCAGCAGCGGCCAGGGTGTCCATGACCTGCTTGGTGTCCATGCCCGACAGGCTGCCGTACAACGGACGGTAATCGGGTTGTTGCGACCACAGCACCACGGCAAAGCCGATGGCCACGCTGGCCGCCAGGCCGACCAGGAGGCCGATCTGGCGCAGCATGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTCAAACCGGCATCT  >  NC_002947/4960252‑4960544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.