| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5395374 | 32 (1.010) | 3 (0.100) | 3/228 | NT | 8.8% | coding (2268/2364 nt) | hsdR | type I restriction modification system endonuclease |
| ? | NC_002947 | = 5395392 | 33 (1.130) | coding (2286/2364 nt) | hsdR | type I restriction modification system endonuclease | |||||
GTAAAGAACGCGCCGAACAAGTGAAAAAGCGTAACTACTTCGCCAAATACTCCGGTGCAGCGCGCCAGGTGCTGGAAGCGCTGCTGGATAAATACGCCGACACCGGCATTGAGCACATCGAGGACATCAAAATCCTCCAGCTCGATCCCTTTAACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5395217‑5395374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttaaccagTTCGATGGGTGCACCGAGCTGGTTAAAGGGATCGAGCTGGAGGATTTTGATGTCCTCGATGTGCTCAATGCCGGTGTCGGCGTATTTATCCAGCAGCGCTTCCAGCACCTGGCGCGCTGCACCGGAGTATTTGGCGAAGTAGTTAC < NC_002947/5395392‑5395247 GTAAAGAACGCGCCGAACAAGTGAAAAAGCGTAACTACTTCGCCAAATACTCCGGTGCAGCGCGCCAGGTGCTGGAAGCGCTGCTGGATAAATACGCCGACACCGGCATTGAGCACATCGAGGACATCAAAATCCTCCAGCTCGATCCCT < 2:446163/150‑1 AAGAACGCGCCGAACAAGTGAAAAAGCGTAACTACTTCGCCAAATACTCCGGTGCAGCGCGCCAGGTGCTGGAAGCGCTGCTGGATAAATACGCCGACACCGGCATTGAGCACAGCCAGGACATCAAAATCCTCCAGCTCGCTCCATTTA > 2:779854/1‑150 GAACGCGCCGAACAAGTGAAAAAGCGTAACTACTTCGCCAAATACTCCGGTGCAGCGCGCCAGGTGCTGGAAGCGCTGCTGGATAAATACGCCGACACCGGCATTGAGCACATCGAGGACATCAAAATCCTCCAGCTCGATCCCTTTAAC < 2:474733/150‑1 AACAAGTGAAAAAGCGTAACTACTTCGCCAAATACTCCGGTGCAGCGCGCCAGGTGCTGGAAGCGCTGCTGGATAAATACGCCGACACCGGCATTGAGCACATCGAGGACATCAAAATCCTCCAGCTCGATCCCTTTAA > 1:470508/1‑139 AACAAGTGAAAAAGCGTAACTACTTCGCCAAATACTCCGGTGCAGCGCGCCAGGTGCTGGAAGCGCTGCTGGATAAATACGCCGACACCGGCATTGAGCACATCGAGGACATCAAAATCCTCCAGCTCGATCCCTTTAA < 2:470508/139‑1 CAGGTGCTGGAAGCGCTGCTGGATAAATACGCCGACACCGGCATTGAGCACATCGAGGACATCAAAATCCTCCAGCTCGATCCCTTTAACCAGTTCGATGGGTGCACCGAGCTGGTTAAAGGGA < 1:712027/124‑1 CAGGTGCTGGAAGCGCTGCTGGATAAATACGCCGACACCGGCATTGAGCACATCGAGGACATCAAAATCCTCCAGCTCGATCCCTTTAACCAGTTCGATGGGTGCACCGAGCTGGTTAAAGGGA > 2:712027/1‑124 GATAAATACGCCGACACCGGCATTGAGCACATCGAGGACATCAAAATCCTCCAGCTCGATCCCTTTAAC < 1:782319/69‑1 GATAAATACGCCGACACCGGCATTGAGCACATCGAGGACATCAAAATCCTCCAGCTCGATCCCTTTAAC > 2:782319/1‑69 GCTCGATCCCTTTAACCAGCTCGGTGCACCCATCGAACTGGTTAAAGGGATCGAGCTGGAGGATTTTGATGTCCTCGATGTGCTCAATGCCGGTGTCGGCGTATTTATCCAGCAGCGCTTCCAGCACCTGGCGCGCTGCACCGGAGTATT > 2:369609/1‑150 TTTAACCAGTTCGATGGGTGCACCGAGCTGGTTAAAGGGATCGAGCTGGAGGATTTTGATGTCCTCGATGTGCTCAATGCCGGTGTCGGCGTATTTATCCAGCAGCGCTTCCAGCACCTGGCGCGCTGCAC > 1:111148/1‑131 TTTAACCAGTTCGATGGGTGCACCGAGCTGGTTAAAGGGATCGAGCTGGAGGATTTTGATGTCCTCGATGTGCTCAATGCCGGTGTCGGCGTATTTATCCAGCAGCGCTTCCAGCACCTGGCGCGCTGCAC < 2:111148/131‑1 CCAGTTCGATGGGTGCACCGAGCTGGTTAAAGGGATCGAGCTGGAGGATTTTGATGTCCTCGATGTGCTCAATGCCGGTGTCGGCGTATTTATCCAGCAGCGCTTCCAGCACCTGGCGCGCTGCACCGGAGTATTTGGCGAAGTAGTTAC < 2:683154/150‑1 GTAAAGAACGCGCCGAACAAGTGAAAAAGCGTAACTACTTCGCCAAATACTCCGGTGCAGCGCGCCAGGTGCTGGAAGCGCTGCTGGATAAATACGCCGACACCGGCATTGAGCACATCGAGGACATCAAAATCCTCCAGCTCGATCCCTTTAACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5395217‑5395374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttaaccagTTCGATGGGTGCACCGAGCTGGTTAAAGGGATCGAGCTGGAGGATTTTGATGTCCTCGATGTGCTCAATGCCGGTGTCGGCGTATTTATCCAGCAGCGCTTCCAGCACCTGGCGCGCTGCACCGGAGTATTTGGCGAAGTAGTTAC < NC_002947/5395392‑5395247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |