New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5734099 = | 36 (1.140) | 4 (0.140) | 4/218 | NT | 11.3% | intergenic (‑69/+88) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase |
? | NC_002947 | 5734152 = | 31 (1.110) | intergenic (‑122/+35) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase |
GAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5734261‑5734099 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcgCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGC > NC_002947/5734152‑5734298 GAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGAGCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCCCCCACAGAAGTAGGTGCAAAACACCATCCCCT > 1:691434/1‑150 AAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTG < 1:560885/150‑1 ACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCG > 1:91203/1‑150 GTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGG > 2:61602/1‑129 GTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGAGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGG < 1:61602/129‑1 CCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTG > 1:32351/1‑90 CCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTG < 2:32351/90‑1 AAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTT < 1:335723/83‑1 AAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTT > 2:335723/1‑83 TGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGG > 2:222664/1‑150 GCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTA > 2:276207/1‑150 GCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGC > 1:411179/1‑150 GCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGG < 1:646657/122‑1 GCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGG > 2:646657/1‑122 GAAAAGGCCGTGGACCTGTTGGCCAAGGGTAGTCTGACCGGCTTGCTGCCGGCGGGTGTACTGCCAAGCCTGTAACGCCCCTGGGGCCGCTGGGCGGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5734261‑5734099 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcgCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGC > NC_002947/5734152‑5734298 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |