| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5827742 = | 36 (1.140) | 3 (0.100) | 3/234 | NT | 8.6% | coding (599/711 nt) | mtgA | monofunctional biosynthetic peptidoglycan transglycosylase |
| ? | NC_002947 | 5827783 = | 30 (1.000) | coding (640/711 nt) | mtgA | monofunctional biosynthetic peptidoglycan transglycosylase | |||||
CCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCATTCAAAGCTTTCTGGAGGAGTCCAGCTGCATCAGGTAGCTGGGCCCGCCCAGCTGGCTCATCTGCCGGCGAATCCAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTCGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5827896‑5827742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctggATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAA > NC_002947/5827783‑5827927 CCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCATTCAAAGCTTTCTGGAGGAGTCCAGCTGCATCAGGTAGCTCGGCCCGCCCAGCTGGCTCATCTGCCGGCGAATCCAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTCG > 2:584611/1‑150 GTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCATTCAAAGCTTTCTGGAGGAGTCCAGCTGCATCAGGTAGCTGGGCCCGCCCAGCTGGCTCATCTGCCGGCGAATCCAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTCGGCT < 2:162995/150‑1 GTCCAGCTGCATCAGGTAGCTGGGCCCGCCCAGCTGGCTCATCTGCCGGCGAATCCAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTC < 1:451378/89‑1 GTCCAGCTGCATCAGGTAGCTGGGCCCGCCCAGCTGGCTCATCTGCCGGCGAATCCAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTC > 2:451378/1‑89 TCCAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCC > 2:481629/1‑150 CAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGA > 1:492349/1‑112 CAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGA < 2:492349/112‑1 GGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAA > 1:213430/1‑150 GCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAA > 1:707299/1‑150 TGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGC > 1:171562/1‑83 TGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGC < 2:171562/83‑1 CCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCATTCAAAGCTTTCTGGAGGAGTCCAGCTGCATCAGGTAGCTGGGCCCGCCCAGCTGGCTCATCTGCCGGCGAATCCAGCCGGCCCGGCTGGCCACGTAGGCACTCGGTCGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5827896‑5827742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctggATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAA > NC_002947/5827783‑5827927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |