New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5827742 =	36 (1.140)	3 (0.100)	3/234	NT	8.6%	coding (599/711 nt)	mtgA	monofunctional biosynthetic peptidoglycan transglycosylase
	?	NC_002947	5827783 =	30 (1.000)					coding (640/711 nt)	mtgA	monofunctional biosynthetic peptidoglycan transglycosylase

TCTATTTGAACAGCGCCGAGTGGGGCAAGGGCGTGTTTGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCG  >  NC_002947/5827595‑5827886                                                                                                                                                    |                                                                                                                                                 tCTATTTGAACAGCGCCGAGTGGGGCAAGGGCGTGTTTGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCa                                                                                                                                                >  1:96183/1‑150 (MQ=255) tCTATTTGAACAGCGCCGAGTGGGGCAAGGGCGTGTTTGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCa                                                                                                                                                >  2:71656/1‑150 (MQ=255)   tttgcccgcgaggaggccggggatgcggttgcccgtaggagcgggtttacccgcgaaagggccgggcctgcattcaaagctttctggaggagtccagctgcatcaggtagctgggcccgcccagctggctcatctgccggcgaatCCAGc                                                                                                                                              >  1:707299‑M1/146‑150 (MQ=255)    ttgcccgcgaggaggccggggatgcggttgcccgtaggagcgggtttacccgcgaaagggccgggcctgcattcaaagctttctggaggagtccagctgcatcaggtagctgggcccgcccagctggctcatctgccggcgaatCCAGcc                                                                                                                                             >  1:213430‑M1/145‑150 (MQ=255)        gAACAGCGCCGAGTGGGGCAAGGGCGTGTTTGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGATAGCAGCGGTGCTGCGAATCCCAATCAAGTGTAGTGCCAGccgacc                                                                                                                                         >  2:733668/1‑150 (MQ=255)            aGCGGCGAGTGGGGCAAGGGCGTGTTTGGTGCCCAGGCAGCGGCGCGTTATGACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGt                                                                                                                                     >  2:593496/1‑150 (MQ=255)                     tGGGGCAAGGGCGTGTTTGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTg                                                                                                                            <  1:198916/150‑1 (MQ=255)                     tGGGGCAAGGGCGTGTTTGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTg                                                                                                                            >  1:411801/1‑150 (MQ=255)                       gggCAAGGGCGTGTTTGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGc                                                                                                                          <  1:846205/150‑1 (MQ=255)                          cAAGGGCGTGTTTGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCGAGCCGACCGAGTGCCTACGTGGCCAg                                                                                                                       >  1:654952/1‑150 (MQ=255)                                   gtTTGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAgccgggccgg                                                                                                              <  1:733668/150‑1 (MQ=255)                                    tttGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGc                                                                                                             >  2:179504/1‑150 (MQ=255)                                      tGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTg                                                                                                           <  1:179504/150‑1 (MQ=255)                                       ggTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGCCCGGCTgg                                                                                                          <  2:734903/150‑1 (MQ=255)                                        ggagcgggtttacccgcgaaagggccgggcctgcattcaaagctttctggaggagtccagctgcatcaggtagctgggcccgcccagctggctcatctgccggcgaatCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGa                                                                                                         >  2:481629‑M1/109‑150 (MQ=255)                                        gTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGa                                                                                                         <  1:773386/150‑1 (MQ=255)                                                            tATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGACGACAGAATGCCCACGTAGGGAAACCGGCTAGCTGGATTTGTCGGCAGATGAGCCAg                                                                                     >  2:520757/1‑150 (MQ=255)                                                                 ggctGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAATTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTggg                                                                                >  2:5886/4‑150 (MQ=255)                                                                 cTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTggg                                                                                >  1:764869/1‑150 (MQ=255)                                                                  tttGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTgggc                                                                               <  1:593496/150‑1 (MQ=255)                                                                    gcctgcattcaaagctttctggaggagtccagctgcatcaggtagctgggcccgcccagctggctcatctgccggcgaatCCa                                                                                                                                                >  1:171562‑M1/81‑83 (MQ=255)                                                                    gcctgcattcaaagctttctggaggagtccagctgcatcaggtagctgggcccgcccagctggctcatctgccggcgaatCCa                                                                                                                                                <  2:171562‑M1/3‑1 (MQ=255)                                                                      gCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTgggcgggc                                                                           <  1:520757/150‑1 (MQ=255)                                                                         tCGACGCCAGCCGGCTCAGACGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCa                                                                        <  2:411801/150‑1 (MQ=255)                                                                            tcaaagctttctggaggagtccagctgcatcaggtagctgggcccgcccagctggctcatctgccggcgaatCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTg                                                                                                           >  1:492349‑M1/73‑112 (MQ=255)                                                                            tcaaagctttctggaggagtccagctgcatcaggtagctgggcccgcccagctggctcatctgccggcgaatCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTg                                                                                                           <  2:492349‑M1/40‑1 (MQ=255)                                                                              gCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGa                                                                                                         >  1:657888/1‑112 (MQ=255)                                                                              gCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGa                                                                                                         <  2:657888/112‑1 (MQ=255)                                                                                cAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCt                                                                 >  1:125500/1‑150 (MQ=255)                                                                                 aGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTg                                                                >  2:14952/1‑150 (MQ=255)                                                                                   ccGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGAt                                                              <  1:121251/150‑1 (MQ=255)                                                                                               ccAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGActc                                                  <  1:763531/150‑1 (MQ=255)                                                                                                      gcagcgcagcTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGa                                           >  1:730942/1‑150 (MQ=255)                                                                                                             agcTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGc                                       >  2:407390/1‑147 (MQ=255)                                                                                                             agcTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGc                                       <  1:407390/147‑1 (MQ=255)                                                                                                              gcgggCAGCGGGGTTGCGAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTg                                   <  2:687801/147‑1 (MQ=255)                                                                                                                   cAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGc                              <  1:14952/150‑1 (MQ=255)                                                                                                                       ggTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTgg                                                                                 <  2:95130/95‑1 (MQ=255)                                                                                                                       ggTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTgg                                                                                 >  1:95130/1‑95 (MQ=255)                                                                                                                              ccAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCCCCAGAAAGCTTTGAATGCAggcccggccc                   >  2:611355/1‑150 (MQ=255)                                                                                                                                aaGCCCAATCAAGTGGAGTGCCATCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCtt                 >  1:291217/1‑150 (MQ=255)                                                                                                                                 aGCCGAATCAGGTGGAGTGCCAGCCGACCGAGTGCCTACGTGTCCAGTCGGGCCGGCGGGATTCGCCGGCAGATGAGACAGCTGGGCGGGCCCAGCTACCTGCTGCAGCTGGCCTCTTCCAGAAAGCTTTGCATGCAggcccgccctgtc                <  2:30704/150‑5 (MQ=255)                                                                                                                                  gCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGGTGCAGCTGGa                                                     >  1:537349/1‑112 (MQ=255)                                                                                                                                  gCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGGTGCAGCTGGa                                                     <  2:537349/112‑1 (MQ=255)                                                                                                                                      aaTCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCgg           <  1:5886/150‑1 (MQ=255)                                                                                                                                               gAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTCGACAAATGCAGGAAGCGTGGAAGGCATGCTCGGCGCTTTAGAGGGTAAAccag  >  2:567238/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                 TCTATTTGAACAGCGCCGAGTGGGGCAAGGGCGTGTTTGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCG  >  NC_002947/5827595‑5827886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.