New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6063028	33 (1.040)	3 (0.100)	3/238	NT	8.7%	intergenic (‑85/‑140)	rubA/ubiC	rubredoxin‑1/chorismate pyruvate‑lyase
	?	NC_002947	= 6063060	31 (1.020)					intergenic (‑117/‑108)	rubA/ubiC	rubredoxin‑1/chorismate pyruvate‑lyase

GCCGTCGTCGGGCCAGCCTTCGGCTTCGTCGTAGATCAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6062875‑6063028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGCGGTCACTGTAGGAGCGGCTTGCCCGCGAAGAGGCCATCAGCAGCAACACAAGCCCCAGCCTGAACCGAGGAAATAGACCTGATGAAAAAGTGGCAATGTATTGTCTGTGGCCT  <  NC_002947/6063060‑6062912                                                                                                                                                                                                                                                                                                                 GCCGTCGTCGGGCCAGCCTTCGGCTTCGTCGTAGATCAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACC                                                                                                                                                           >  1:830709/1‑150    GTCGTCGGGCCAGCCTTCGGCTTCGTCGTAGATCAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCG                                                                                                                                                        >  1:565046/1‑150                                                    actTTGTCACTGGTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGCGGTCACTGTAG                                                                                                        <  2:607088/147‑1                                                                              TTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGC                                                                                                                   >  1:338668/1‑113                                                                              TTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGC                                                                                                                   <  2:338668/113‑1                                                                                                                                                       GCGCTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGCGGTCACTGTAGGAGCGGCTTGCCCGCGAAGAGGCCATCAGCAGCAACACAAGCCCCAGCCTGAACCGAGGAAA                                          <  1:302816/113‑1                                                                                                                                                       GCGCTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGCGGTCACTGTAGGAGCGGCTTGCCCGCGAAGAGGCCATCAGCAGCAACACAAGCCCCAGCCTGAACCGAGGAAA                                          >  2:302816/1‑113                                                                                                                                                        CGCTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGCGGTCACTGTAGGAGCGGCTTGCCCGCGAAGAGGCCATCAGCAGCAACACAAGCCCCAGCCTGAACCGAGGAAATAGACCTGATGAAAAAGTGGCAATGTATTGTCTGTGGC    <  2:596817/150‑1                                                                                                                                                          CTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGCGGTCACTGTAGGAGCGGCTTGCCCGCGAAGAGGCCATCAGCAGCAACACAAGCCCCAGCCTGAACCGAGGAAATAGACCTGATGAAAAAGTGGCAATGTATTGTCTGTGGCCT  <  2:592688/150‑1                                                                                                                                                                                                                                                                                                                 GCCGTCGTCGGGCCAGCCTTCGGCTTCGTCGTAGATCAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6062875‑6063028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGCGGTCACTGTAGGAGCGGCTTGCCCGCGAAGAGGCCATCAGCAGCAACACAAGCCCCAGCCTGAACCGAGGAAATAGACCTGATGAAAAAGTGGCAATGTATTGTCTGTGGCCT  <  NC_002947/6063060‑6062912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.